BSD Portswip/py-cobra 0.4.0b1 NetBSD
Constraints-based modeling of biological networks
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v2
- Categories
- wip, biology
Description
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes. COBRApy is a constraint-based modeling package that is designed to accomodate the biological complexity of the next generation of COBRA models and provides access to commonly used COBRA methods, such as flux balance analysis, flux variability analysis, and gene deletion analyses
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/py-cobra && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 4
No port depends on this one.