wip/py-dna-features-viewer 3.1.3 NetBSD

Python library to visualize DNA features, e.g. GenBank or Gff files

System: NetBSD
Repository: pkgsrc-wip
Maintainer: [email protected]
License: mit
Categories: wip, biology

Description

DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files. DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/py-dna-features-viewer && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["wip/py-dna-features-viewer"]
  me --> d0["graphics/py-matplotlib"]
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

Run dependencies 1

graphics/py-matplotlib

No port depends on this one.