wip/py-htseq 2.0.3 NetBSD

Python library to facilitate programmatic analysis of sequence data

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System: NetBSD
Repository: pkgsrc-wip
Maintainer: [email protected]
License: gnu-gpl-v3
Categories: wip, biology

Description

HTSeq is a Python library to facilitate programmatic analysis of data from high-throughput sequencing (HTS) experiments. A popular component of HTSeq is htseq-count, a script to quantify gene expression in bulk and single-cell RNA-Seq and similar experiments.

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/py-htseq && make install clean

Dependencies

Run dependencies 3

graphics/py-matplotlib
math/py-numpy
wip/py-pysam

No port depends on this one.