BSD Ports

wip/py-neo 0.3.3 NetBSD

Python package for representing electrophysiology data

System
NetBSD
Repository
pkgsrc-wip
Maintainer
[email protected]
License
modified-bsd
Categories
wip, biology, python

Description

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock, Plexon, Tdt, and support for writing to a subset of these formats plus non-proprietary formats including HDF5.

The goal of Neo is to improve interoperability between Python tools for analyzing, visualizing and generating electrophysiology data (such as OpenElectrophy, NeuroTools, G-node, Helmholtz, PyNN) by providing a common, shared object model. In order to be as lightweight a dependency as possible, Neo is deliberately limited to represention of data, with no functions for data analysis or visualization.

Neo implements a hierarchical data model well adapted to intracellular and extracellular electrophysiology and EEG data with support for multi-electrodes (for example tetrodes). Neo's data objects build on the quantities_ package, which in turn builds on NumPy by adding support for physical dimensions. Thus neo objects behave just like normal NumPy arrays, but with additional metadata, checks for dimensional consistency and automatic unit conversion.

In the other systems

The newest version among them is 0.6.1, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
NetBSDwip/py-neo0.3.3none known-[email protected]-
FreeBSDgames/neo by name0.6.1 newestnone known-[email protected]-
DragonFlygames/neo by name0.6.1 newestnone known-[email protected]-
HardenedBSDgames/neo by name0.6.1 newestno data-[email protected]-
GhostBSDgames/neo by name0.6.1 newestno data-[email protected]-

Compare across BSDs

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/py-neo && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

Run dependencies 3

No port depends on this one.