wip/py-pydeseq2 0.5.2 NetBSD

Python implementation of the popular DESeq2 R package

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System: NetBSD
Repository: pkgsrc-wip
Maintainer: [email protected]
License: mit
Categories: wip, biology, python

Description

PyDESeq2 is a python implementation of the DESeq2 method for differential expression analysis (DEA) with bulk RNA-seq data, originally in R. It aims to facilitate DEA experiments for python users.

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/py-pydeseq2 && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["wip/py-pydeseq2"]
  me --> d0["math/py-numpy"]
  me --> d1["math/py-pandas"]
  me --> d2["math/py-scikit-learn"]
  me --> d3["math/py-scipy"]
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

Build dependencies 2

devel/py-setuptools
devel/py-wheel

Run dependencies 4

math/py-numpy
math/py-pandas
math/py-scikit-learn
math/py-scipy

No port depends on this one.