wip/py-sima 0.3.2 NetBSD

Software for analysis of sequential imaging data

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System: NetBSD
Repository: pkgsrc-wip
Maintainer: [email protected]
License: gnu-gpl-v2
Categories: wip, biology

Description

SIMA (Sequential IMage Analysis) is an Open Source package for analysis of time-series imaging data arising from fluorescence microscopy. The functionality of this package includes:

correction of motion artifacts segmentation of imaging fields into regions of interest (ROIs) extraction of dynamic signals from ROIs

The included ROI Buddy software provides a graphical user interface (GUI) supporting the following functionality:

manual creation of ROIs editing of ROIs resulting from automated segmentation registration of ROIs across separate imaging sessions

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/py-sima && make install clean

Dependencies

Run dependencies 1

math/py-numpy

No port depends on this one.