BSD Portswip/scythe 2016.02.10 NetBSD
3'-end adapter contaminant trimmer
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v2
- Categories
- wip, biology
Description
Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases.
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/scythe && make install cleanDependencies
Run dependencies 1
No port depends on this one.