BSD Portswip/sickle 1.33 NetBSD
Windowed adaptive trimming tool for FASTQ files using quality
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v2
- Categories
- wip, biology
Description
Sickle is a tool that uses sliding windows along with quality and length thresholds to determine when quality is sufficiently low to trim the 3'-end of reads and also determines when the quality is sufficiently high enough to trim the 5'-end of reads.
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/sickle && make install cleanDependencies
Run dependencies 1
No port depends on this one.