wip/spatt pre7 NetBSD

Statistics for Patterns

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System: NetBSD
Repository: pkgsrc-wip
Maintainer: [email protected]
License: gnu-gpl-v3
Categories: wip, biology

Description

SPatt (Statistic for Patterns) is a suite of C++ programs designed for the computation of pattern occurrences p-value on text. Assuming the text is generated according to Markov model, the p-value of a given observation is its probability to occur. The lower is the p-value, the more unlikely is the observation. For example, this tools can be used to find patterns with unusual behaviour in DNA sequences

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/spatt && make install clean

Dependencies

No port depends on this one.