wip/wise2 2.2.0nb1 NetBSD
Tool for Comparing bio polymers like DNA and Protein sequences
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- Categories
- wip, biology
Description
Wise2 is a package focused on comparisons of bio polymers, commonly DNA sequence and protein sequence. Wise2's particular forte is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of say gene structure with homology based alignment.
Wise2 also contains other algorithms, such as the venerable Smith-Waterman algorithm, or more modern ones such as Stephen Altschul's generalised gap penalties, or even experimental ones developed in house, such as dba.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/wise2 | 2.2.0nb1 |
| FreeBSD | biology/wise | 2.4.1_1 |
| DragonFly | biology/wise | 2.4.1_1 |
| HardenedBSD | biology/wise | 2.4.1_1 |
| GhostBSD | biology/wise | 2.4.1_1 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/wise2 && make install clean
Dependencies
No port depends on this one.