BSD Ports

wip/wise2 2.2.0nb1 NetBSD

Tool for Comparing bio polymers like DNA and Protein sequences

System
NetBSD
Repository
pkgsrc-wip
Maintainer
[email protected]
Categories
wip, biology

Description

Wise2 is a package focused on comparisons of bio polymers, commonly DNA sequence and protein sequence. Wise2's particular forte is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of say gene structure with homology based alignment.

Wise2 also contains other algorithms, such as the venerable Smith-Waterman algorithm, or more modern ones such as Stephen Altschul's generalised gap penalties, or even experimental ones developed in house, such as dba.

In the other systems

SystemPortVersion
NetBSDwip/wise22.2.0nb1
FreeBSDbiology/wise2.4.1_1
DragonFlybiology/wise2.4.1_1
HardenedBSDbiology/wise2.4.1_1
GhostBSDbiology/wise2.4.1_1

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/wise2 && make install clean

Dependencies

No port depends on this one.