wip/xmatchview NetBSD

Genome alignment visualization

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System: NetBSD
Repository: pkgsrc-wip
Maintainer: [email protected]
License: gnu-gpl-v3
Categories: wip, biology

Description

xmatchview, xmatchview-conifer and xmatchview-hive are imaging tools for visualizing DNA/RNA sequence synteny. It allows users to align 2 (or 3) sequences in FASTA format using cross_match, minimap2 or any aligners with .paf output capabilities, and displays the alignments in a variety of image formats (png, tiff). xmatchview-hive outputs xml-scalable vector graphics (svg).

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/xmatchview && make install clean

Dependencies

Run dependencies 1

graphics/py-Pillow

No port depends on this one.