BSD Ports

archivers/vbz-compression 1.0.13 FreeBSD

Variable byte integer encoding to compress Oxford Nanopore signal data

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Last update
Commit
2414383046
License
MPL20
Categories
archivers
Package size
21.0 KiB, 62.1 KiB installed

Description

VBZ Compression uses variable byte integer encoding to compress Oxford Nanopore signal data. The performance of VBZ is achieved by taking advantage of the properties of the raw signal and therefore is most effective when applied to the signal dataset. Other datasets you may have in your Fast5 files will not be able to take advantage of the default VBZ settings for compression. VBZ will be used as the default compression scheme in a future release of MinKNOW.

In the other systems

SystemPortVersion
FreeBSDarchivers/vbz-compression1.0.13
DragonFlyarchivers/vbz-compression1.0.3

Install

Binary package:

pkg install vbz-compression

From the ports tree:

cd /usr/ports/archivers/vbz-compression/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	vbz-compression>0:archivers/vbz-compression

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest1.0.131.0.13-1.0.131.0.13
FreeBSD:14:quarterly1.0.131.0.13n/a1.0.131.0.13
FreeBSD:15:latest1.0.131.0.13n/a1.0.131.0.13
FreeBSD:15:quarterly1.0.131.0.13n/an/an/a
FreeBSD:16:latest1.0.131.0.13n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

As this port's Makefile names them.

Build 1

Library 2

The full lists below include those, and their dependencies in turn.

Build dependencies 25
Run dependencies 10

Configuration

No options to configure.

USES
cmake
Service scripts
none

Files

distinfo 1
FileSizeSHA256
nanoporetech-vbz_compression-1.0.13_GH0.tar.gz5.364717e+0636cb0581391a0b59f63bf9f7046181bea9a0901c59c3bba689d66f5d7d7f3748

Commit history 1

DateCommitCreditsLog message
2414383046 Jason W. Bacon Release numerous ports to ports@
I've been retired for a few years, and it is unlikely I will be doing any more scientific computing support in the future. I have continued to maintain ~160 ports to the best of my ability, mainly as a favor to the community, but I can no longer justify the time and effort required. I am therefore releasing most of my scientific ports, along with a few others, to ports@. I will continue to maintain ports I am actively using and those for which I am upstream.