BSD Portsbiology/bioawk 1.0.7 FreeBSD
BWK awk modified for biological data
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- BSD3CLAUSE
- Categories
- biology
- Package size
- 59.7 KiB, 201.9 KiB installed
Description
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/bioawk | 1.0.7 |
| DragonFly | biology/bioawk | 1.0.7 |
Install
Binary package:
pkg install bioawkFrom the ports tree:
cd /usr/ports/biology/bioawk/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= bioawk>0:biology/bioawkPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.0.7 | 1.0.7 | 1.0.7 | 1.0.7 | 1.0.7 |
| FreeBSD:14:quarterly | 1.0.7 | 1.0.7 | n/a | 1.0.7 | 1.0.7 |
| FreeBSD:15:latest | 1.0.7 | 1.0.7 | n/a | 1.0.7 | 1.0.7 |
| FreeBSD:15:quarterly | 1.0.7 | 1.0.7 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.0.7 | 1.0.7 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Required by 1
Configuration
No options to configure.
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| lh3-bioawk-v1.0-7-gfd40150_GH0.tar.gz | 72209 | 4510ee9493d0acef846e66f7b370c83e6e731954437ef6128a2e0b1fa8a38874 |