BSD Ports

biology/bioawk 1.0.7 DragonFly

BWK awk modified for biological data

System
DragonFly
Repository
DPorts
Maintainer
[email protected] (as in FreeBSD)
License
BSD3CLAUSE
Categories
biology
Package size
53.8 KiB, 194.3 KiB installed

Description

Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk.

In the other systems

SystemPortVersion
DragonFlybiology/bioawk1.0.7
FreeBSDbiology/bioawk1.0.7
HardenedBSDbiology/bioawk1.0.7
GhostBSDbiology/bioawk1.0.7

Install

Binary package:

pkg install bioawk

From DPorts:

cd /usr/dports/biology/bioawk && make install clean

Dependencies

No port depends on this one.