biology/biococoa 2.2.2_9 FreeBSD

Bioinformatics framework

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: LGPL21
Categories: biology, gnustep
Package size: 159.8 KiB, 813.8 KiB installed

Description

The BioCocoa framework provides developers with the opportunity to add support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE, Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and TNT files by writing only three lines of code. The framework is written in Cocoa (Objective-C).

LICENSE: LGPL2 or later

In the other systems

System

Port

Version

FreeBSD

biology/biococoa

2.2.2_9

MidnightBSD

biology/biococoa

2.2.2

HardenedBSD

biology/biococoa

2.2.2_9

GhostBSD

biology/biococoa

2.2.2_9

Install

Binary package:

pkg install biococoa

From the ports tree:

cd /usr/ports/biology/biococoa/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	biococoa>0:biology/biococoa

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

2.2.2_9

FreeBSD:14:quarterly

2.2.2_9

n/a

2.2.2_9

FreeBSD:15:latest

2.2.2_9

n/a

2.2.2_9

FreeBSD:15:quarterly

2.2.2_9

n/a

FreeBSD:16:latest

2.2.2_9

n/a

FreeBSD:16:quarterly

n/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 83

Run dependencies 82

Required by 1

x11/gnustep-app

Configuration

No options to configure.

USES: gnustep tar:tgz
Service scripts: none

Message after installing

===>   NOTICE:

The biococoa port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Files

pkg-plist 65

GNUstep/System/Library/Frameworks/BioCocoa.framework/BioCocoa
GNUstep/System/Library/Frameworks/BioCocoa.framework/Headers
GNUstep/System/Library/Frameworks/BioCocoa.framework/Resources
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/BioCocoa
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAnnotation.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAtom.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCChain.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodon.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCMCP.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotide.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPlatform.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPreferences.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCResidue.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSample.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequence.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSeries.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSymbol.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolComplement.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolDigest.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCUtilData.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/aminoacids.plist
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/nucleotides.plist
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/Current
GNUstep/System/Library/Frameworks/BioCocoa.framework/libBioCocoa.so
GNUstep/System/Library/Headers/BioCocoa
GNUstep/System/Library/Libraries/libBioCocoa.so
GNUstep/System/Library/Libraries/libBioCocoa.so.2
GNUstep/System/Library/Libraries/libBioCocoa.so.2.2.2

distinfo 1

File

Size

SHA256

biococoa-2.2.2-src.tgz

358850

383eea4e04ca584ecf5bc06507996acf193d3b1df9afecaca6fb58cbe41df384

Master sites 1

http://bioinformatics.org/biococoa/downloads/

Commit history 0

No commits in the history this site was built from.