BSD Ports

biology/biococoa 2.2.2 MidnightBSD

Bioinformatics framework

System
MidnightBSD
Repository
mports
Maintainer
[email protected]
License
lgpl2.1
Categories
biology, gnustep

Description

The BioCocoa framework provides developers with the opportunity to add support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE, Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and TNT files by writing only three lines of code. The framework is written in Cocoa (Objective-C).

LICENSE: LGPL2 or later

In the other systems

The newest version among them is 2.2.2, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
MidnightBSDbiology/biococoa2.2.2 newestno data-[email protected]-
FreeBSDbiology/biococoa2.2.2_9 newestnone known-[email protected]-
HardenedBSDbiology/biococoa2.2.2_9 newestno data-[email protected]-
GhostBSDbiology/biococoa2.2.2_9 newestno data-[email protected]-

Install

Binary package:

mport install biococoa

From mports:

cd /usr/mports/biology/biococoa && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	biococoa>0:biology/biococoa

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

Required by 1

Configuration

No options to configure.

USES
gnustep tar:tgz
Service scripts
none

Files

pkg-plist 65
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/BioCocoa
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Headers
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Resources
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/BioCocoa
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAnnotation.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAtom.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCChain.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodon.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCMCP.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotide.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPlatform.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPreferences.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCResidue.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSample.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequence.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSeries.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSymbol.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolComplement.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolDigest.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCUtilData.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/aminoacids.plist
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/nucleotides.plist
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/Current
  • GNUstep/System/Library/Frameworks/BioCocoa.framework/libBioCocoa.so
  • GNUstep/System/Library/Headers/BioCocoa
  • GNUstep/System/Library/Libraries/libBioCocoa.so
  • GNUstep/System/Library/Libraries/libBioCocoa.so.2
  • GNUstep/System/Library/Libraries/libBioCocoa.so.2.2.2
distinfo 1
FileSizeSHA256
biococoa-2.2.2-src.tgz358850383eea4e04ca584ecf5bc06507996acf193d3b1df9afecaca6fb58cbe41df384
Master sites 1
  • http://bioinformatics.org/biococoa/downloads/