BSD Portsbiology/biolibc-tools 0.1.5 FreeBSD
High-performance bioinformatics tools based on biolibc
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- BSD2CLAUSE
- Categories
- biology
- Package size
- 30.5 KiB, 103.3 KiB installed
Description
Biolibc-tools is a collection of simple fast, memory-efficient, programs for processing biological data. These are simple programs built on biolibc that are not complex enough to warrant a separate project.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/biolibc-tools | 0.1.5 |
| NetBSD | biology/biolibc-tools | 0.1.4.13 |
| DragonFly | biology/biolibc-tools | 0.1.4.13_1 |
| HardenedBSD | biology/biolibc-tools | 0.1.5 |
| GhostBSD | biology/biolibc-tools | 0.1.5 |
Install
Binary package:
pkg install biolibc-toolsFrom the ports tree:
cd /usr/ports/biology/biolibc-tools/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= biolibc-tools>0:biology/biolibc-toolsPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.1.5 | 0.1.5 | 0.1.4.1 | 0.1.5 | 0.1.5 |
| FreeBSD:14:quarterly | 0.1.5 | 0.1.5 | n/a | 0.1.5 | 0.1.5 |
| FreeBSD:15:latest | 0.1.5 | 0.1.5 | n/a | 0.1.5 | 0.1.5 |
| FreeBSD:15:quarterly | 0.1.5 | 0.1.5 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.1.5 | 0.1.5 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 1
uthash>0: devel/uthash
Library 3
libbiolibc.so: biology/biolibclibxtend.so: devel/libxtendlibxxhash.so: devel/xxhash
The full lists below include those, and their dependencies in turn.
Build dependencies 4
Run dependencies 3
Required by 3
Configuration
No options to configure.
- Service scripts
- none
Files
Manual pages 14
- blt(1)
- blt-chrom-lens(1)
- blt-deromanize(1)
- blt-ensemblid2gene(1)
- blt-extract-seq(1)
- blt-fasta2seq(1)
- blt-fastq-derep.sh(1)
- blt-fastx-derep(1)
- blt-fastx-stats(1)
- blt-fastx2tsv(1)
- blt-find-orfs(1)
- blt-gff3-to-bed(1)
- blt-vcf-downsample(1)
- blt-vcf-search(1)
pkg-plist 29
- bin/blt
- libexec/biolibc-tools/chrom-lens
- libexec/biolibc-tools/deromanize
- libexec/biolibc-tools/ensemblid2gene
- libexec/biolibc-tools/extract-seq
- libexec/biolibc-tools/fasta2seq
- libexec/biolibc-tools/fastq-derep.sh
- libexec/biolibc-tools/fastx-derep
- libexec/biolibc-tools/fastx-stats
- libexec/biolibc-tools/fastx2tsv
- libexec/biolibc-tools/find-orfs
- libexec/biolibc-tools/gff3-to-bed
- libexec/biolibc-tools/uniq-seqs.awk
- libexec/biolibc-tools/vcf-downsample
- libexec/biolibc-tools/vcf-search
- share/man/man1/blt-chrom-lens.1.gz
- share/man/man1/blt-deromanize.1.gz
- share/man/man1/blt-ensemblid2gene.1.gz
- share/man/man1/blt-extract-seq.1.gz
- share/man/man1/blt-fasta2seq.1.gz
- share/man/man1/blt-fastq-derep.sh.1.gz
- share/man/man1/blt-fastx-derep.1.gz
- share/man/man1/blt-fastx-stats.1.gz
- share/man/man1/blt-fastx2tsv.1.gz
- share/man/man1/blt-find-orfs.1.gz
- share/man/man1/blt-gff3-to-bed.1.gz
- share/man/man1/blt-vcf-downsample.1.gz
- share/man/man1/blt-vcf-search.1.gz
- share/man/man1/blt.1.gz
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| auerlab-biolibc-tools-0.1.5_GH0.tar.gz | 28822 | c9456237ef16907488488e596efb08056e8a2ca0a8752642ae4dc47163bd6214 |
Commit history 0
No commits in the history this site was built from.