biology/biolibc 0.2.7 FreeBSD

Low-level high-performance bioinformatics library

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: BSD2CLAUSE
Categories: biology
Package size: 340.9 KiB, 555.2 KiB installed

Description

Biolibc is a library of fast, memory-efficient, low-level functions for processing biological data. Like libc, it consists of numerous disparate, general-purpose functions which could be used by a wide variety of applications. These include functions for streaming common file formats such as SAM and VCF, string functions specific to bioinformatics, etc.

In the other systems

System

Port

Version

FreeBSD

biology/biolibc

0.2.7

NetBSD

biology/biolibc

0.2.6.4

DragonFly

biology/biolibc

0.2.6.4

HardenedBSD

biology/biolibc

0.2.7

GhostBSD

biology/biolibc

0.2.7

Install

Binary package:

pkg install biolibc

From the ports tree:

cd /usr/ports/biology/biolibc/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	biolibc>0:biology/biolibc
LIB_DEPENDS=	libbiolibc.so:biology/biolibc

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository	aarch64	amd64	armv6	armv7	i386
FreeBSD:14:latest	0.2.7	0.2.7	0.2.4	0.2.7	0.2.7
FreeBSD:14:quarterly	0.2.7	0.2.7	n/a	0.2.7	0.2.7
FreeBSD:15:latest	0.2.7	0.2.7	n/a	0.2.7	0.2.7
FreeBSD:15:quarterly	0.2.7	0.2.7	n/a	n/a	n/a
FreeBSD:16:latest	0.2.7	0.2.7	n/a	n/a	n/a
FreeBSD:16:quarterly	n/a	n/a	n/a	n/a	n/a

Dependencies

As this port's Makefile names them.

Library 1

libxtend.so : devel/libxtend

The full lists below include those, and their dependencies in turn.

Build dependencies 1

devel/libxtend

Run dependencies 1

devel/libxtend

Required by 11

Configuration

No options to configure.

Service scripts: none

Files

Manual pages 474

BL_ALIGN_MAX_MISMATCH_PERCENT(3)
BL_ALIGN_MIN_MATCH(3)
BL_BED_BLOCK_COUNT(3)
BL_BED_BLOCK_SIZES(3)
BL_BED_BLOCK_SIZES_AE(3)
BL_BED_BLOCK_STARTS(3)
BL_BED_BLOCK_STARTS_AE(3)
BL_BED_CHROM(3)
BL_BED_CHROM_AE(3)
BL_BED_CHROM_END(3)
BL_BED_CHROM_START(3)
BL_BED_FIELDS(3)
BL_BED_ITEM_RGB(3)
BL_BED_ITEM_RGB_AE(3)
BL_BED_NAME(3)
BL_BED_NAME_AE(3)
BL_BED_SCORE(3)
BL_BED_STRAND(3)
BL_BED_THICK_END(3)
BL_BED_THICK_START(3)
BL_FASTA_DESC(3)
BL_FASTA_DESC_AE(3)
BL_FASTA_DESC_ARRAY_SIZE(3)
BL_FASTA_DESC_LEN(3)
BL_FASTA_SEQ(3)
BL_FASTA_SEQ_AE(3)
BL_FASTA_SEQ_ARRAY_SIZE(3)
BL_FASTA_SEQ_LEN(3)
BL_FASTQ_DESC(3)
BL_FASTQ_DESC_AE(3)
BL_FASTQ_DESC_ARRAY_SIZE(3)
BL_FASTQ_DESC_LEN(3)
BL_FASTQ_PLUS(3)
BL_FASTQ_PLUS_AE(3)
BL_FASTQ_PLUS_ARRAY_SIZE(3)
BL_FASTQ_PLUS_LEN(3)
BL_FASTQ_QUAL(3)
BL_FASTQ_QUAL_AE(3)
BL_FASTQ_QUAL_ARRAY_SIZE(3)
BL_FASTQ_QUAL_LEN(3)
BL_FASTQ_SEQ(3)
BL_FASTQ_SEQ_AE(3)
BL_FASTQ_SEQ_ARRAY_SIZE(3)
BL_FASTQ_SEQ_LEN(3)
BL_FASTX_FASTA(3)
BL_FASTX_FASTQ(3)
BL_FASTX_FORMAT(3)
BL_FASTX_UNION(3)
BL_FASTX_}(3)
BL_GFF_ATTRIBUTES(3)
BL_GFF_ATTRIBUTES_AE(3)
BL_GFF_ATTRIBUTES_ARRAY_SIZE(3)
BL_GFF_ATTRIBUTES_LEN(3)
BL_GFF_END(3)
BL_GFF_FEATURE_ID(3)
BL_GFF_FEATURE_ID_AE(3)
BL_GFF_FEATURE_NAME(3)
BL_GFF_FEATURE_NAME_AE(3)
BL_GFF_FEATURE_PARENT(3)
BL_GFF_FEATURE_PARENT_AE(3)
BL_GFF_FILE_POS(3)
BL_GFF_INDEX_ARRAY_SIZE(3)
BL_GFF_INDEX_COUNT(3)
BL_GFF_INDEX_END(3)
BL_GFF_INDEX_END_AE(3)
BL_GFF_INDEX_FILE_POS(3)
BL_GFF_INDEX_FILE_POS_AE(3)
BL_GFF_INDEX_SEQID(3)
BL_GFF_INDEX_SEQID_AE(3)
BL_GFF_INDEX_START(3)
BL_GFF_INDEX_START_AE(3)
BL_GFF_PHASE(3)
BL_GFF_SCORE(3)
BL_GFF_SEQID(3)
BL_GFF_SEQID_AE(3)
BL_GFF_SOURCE(3)
BL_GFF_SOURCE_AE(3)
BL_GFF_START(3)
BL_GFF_STRAND(3)
BL_GFF_TYPE(3)
BL_GFF_TYPE_AE(3)
BL_OVERLAP_FEATURE1_LEN(3)
BL_OVERLAP_FEATURE2_LEN(3)
BL_OVERLAP_OVERLAP_END(3)
BL_OVERLAP_OVERLAP_LEN(3)
BL_OVERLAP_OVERLAP_START(3)
BL_POS_LIST_ARRAY_SIZE(3)
BL_POS_LIST_COUNT(3)
BL_POS_LIST_POSITIONS(3)
BL_POS_LIST_POSITIONS_AE(3)
BL_SAM_BUFF_ALIGNMENTS(3)
BL_SAM_BUFF_ALIGNMENTS_AE(3)
BL_SAM_BUFF_BUFFERED_COUNT(3)
BL_SAM_BUFF_BUFF_SIZE(3)
BL_SAM_BUFF_DISCARDED_ALIGNMENTS(3)
BL_SAM_BUFF_DISCARDED_SCORE_SUM(3)
BL_SAM_BUFF_DISCARDED_TRAILING(3)
BL_SAM_BUFF_INC_DISCARDED_TRAILING(3)
BL_SAM_BUFF_INC_TOTAL_ALIGNMENTS(3)
BL_SAM_BUFF_INC_TRAILING_ALIGNMENTS(3)
BL_SAM_BUFF_MAPQ_HIGH(3)
BL_SAM_BUFF_MAPQ_LOW(3)
BL_SAM_BUFF_MAPQ_MIN(3)
BL_SAM_BUFF_MAPQ_SUM(3)
BL_SAM_BUFF_MAX_ALIGNMENTS(3)
BL_SAM_BUFF_MAX_COUNT(3)
BL_SAM_BUFF_MAX_DISCARDED_SCORE(3)
BL_SAM_BUFF_MIN_DISCARDED_SCORE(3)
BL_SAM_BUFF_PREVIOUS_POS(3)
BL_SAM_BUFF_PREVIOUS_RNAME(3)
BL_SAM_BUFF_PREVIOUS_RNAME_AE(3)
BL_SAM_BUFF_READS_USED(3)
BL_SAM_BUFF_TOTAL_ALIGNMENTS(3)
BL_SAM_BUFF_TRAILING_ALIGNMENTS(3)
BL_SAM_BUFF_UNMAPPED_ALIGNMENTS(3)
BL_SAM_CIGAR(3)
BL_SAM_CIGAR_AE(3)
BL_SAM_CIGAR_ARRAY_SIZE(3)
BL_SAM_CIGAR_LEN(3)
BL_SAM_FLAG(3)
BL_SAM_MAPQ(3)
BL_SAM_PNEXT(3)
BL_SAM_POS(3)
BL_SAM_QNAME(3)
BL_SAM_QNAME_AE(3)
BL_SAM_QUAL(3)
BL_SAM_QUAL_AE(3)
BL_SAM_QUAL_ARRAY_SIZE(3)
BL_SAM_QUAL_LEN(3)
BL_SAM_RNAME(3)
BL_SAM_RNAME_AE(3)
BL_SAM_RNEXT(3)
BL_SAM_RNEXT_AE(3)
BL_SAM_SEQ(3)
BL_SAM_SEQ_AE(3)
BL_SAM_SEQ_ARRAY_SIZE(3)
BL_SAM_SEQ_LEN(3)
BL_SAM_TLEN(3)
BL_VCF_ALT(3)
BL_VCF_ALT_AE(3)
BL_VCF_ALT_COUNT(3)
BL_VCF_CHROM(3)
BL_VCF_CHROM_AE(3)
BL_VCF_FILTER(3)
BL_VCF_FILTER_AE(3)
BL_VCF_FORMAT(3)
BL_VCF_FORMAT_AE(3)
BL_VCF_FORMAT_ARRAY_SIZE(3)
BL_VCF_FORMAT_LEN(3)
BL_VCF_ID(3)
BL_VCF_ID_AE(3)
BL_VCF_INFO(3)
BL_VCF_INFO_AE(3)
BL_VCF_INFO_ARRAY_SIZE(3)
BL_VCF_INFO_LEN(3)
BL_VCF_MULTI_SAMPLES(3)
BL_VCF_MULTI_SAMPLES_AE(3)
BL_VCF_MULTI_SAMPLE_ARRAY_SIZES(3)
BL_VCF_MULTI_SAMPLE_ARRAY_SIZES_AE(3)
BL_VCF_MULTI_SAMPLE_COUNT(3)
BL_VCF_MULTI_SAMPLE_LENS(3)
BL_VCF_MULTI_SAMPLE_LENS_AE(3)
BL_VCF_MULTI_SAMPLE_POINTER_ARRAY_SIZE(3)
BL_VCF_OTHER_COUNT(3)
BL_VCF_PHREDS(3)
BL_VCF_PHREDS_AE(3)
BL_VCF_PHRED_BUFF_SIZE(3)
BL_VCF_PHRED_COUNT(3)
BL_VCF_POS(3)
BL_VCF_QUAL(3)
BL_VCF_QUAL_AE(3)
BL_VCF_REF(3)
BL_VCF_REF_AE(3)
BL_VCF_REF_COUNT(3)
BL_VCF_SAMPLE_ARRAY_SIZE(3)
BL_VCF_SAMPLE_LEN(3)
BL_VCF_SAMPLE_MAX(3)
BL_VCF_SINGLE_SAMPLE(3)
BL_VCF_SINGLE_SAMPLE_AE(3)
BL_VCF_SINGLE_SAMPLE_ARRAY_SIZE(3)
BL_VCF_SINGLE_SAMPLE_LEN(3)
biolibc(3)
bl_align_map_seq_exact(3)
bl_align_map_seq_sub(3)
bl_align_set_max_mismatch_percent(3)
bl_align_set_min_match(3)
bl_bed_check_order(3)
bl_bed_gff3_cmp(3)
bl_bed_gff_cmp(3)
bl_bed_read(3)
bl_bed_set_block_count(3)
bl_bed_set_block_sizes(3)
bl_bed_set_block_sizes_ae(3)
bl_bed_set_block_sizes_cpy(3)
bl_bed_set_block_starts(3)
bl_bed_set_block_starts_ae(3)
bl_bed_set_block_starts_cpy(3)
bl_bed_set_chrom_ae(3)
bl_bed_set_chrom_cpy(3)
bl_bed_set_chrom_end(3)
bl_bed_set_chrom_start(3)
bl_bed_set_fields(3)
bl_bed_set_item_rgb_ae(3)
bl_bed_set_item_rgb_cpy(3)
bl_bed_set_name_ae(3)
bl_bed_set_name_cpy(3)
bl_bed_set_score(3)
bl_bed_set_strand(3)
bl_bed_set_thick_end(3)
bl_bed_set_thick_start(3)
bl_bed_skip_header(3)
bl_bed_write(3)
bl_chrom_name_cmp(3)
bl_fasta_free(3)
bl_fasta_init(3)
bl_fasta_read(3)
bl_fasta_set_desc(3)
bl_fasta_set_desc_ae(3)
bl_fasta_set_desc_array_size(3)
bl_fasta_set_desc_cpy(3)
bl_fasta_set_desc_len(3)
bl_fasta_set_seq(3)
bl_fasta_set_seq_ae(3)
bl_fasta_set_seq_array_size(3)
bl_fasta_set_seq_cpy(3)
bl_fasta_set_seq_len(3)
bl_fasta_write(3)
bl_fastq_3p_trim(3)
bl_fastq_5p_trim(3)
bl_fastq_find_3p_low_qual(3)
bl_fastq_find_5p_low_qual(3)
bl_fastq_free(3)
bl_fastq_init(3)
bl_fastq_name_cmp(3)
bl_fastq_read(3)
bl_fastq_set_desc(3)
bl_fastq_set_desc_ae(3)
bl_fastq_set_desc_array_size(3)
bl_fastq_set_desc_cpy(3)
bl_fastq_set_desc_len(3)
bl_fastq_set_plus(3)
bl_fastq_set_plus_ae(3)
bl_fastq_set_plus_array_size(3)
bl_fastq_set_plus_cpy(3)
bl_fastq_set_plus_len(3)
bl_fastq_set_qual(3)
bl_fastq_set_qual_ae(3)
bl_fastq_set_qual_array_size(3)
bl_fastq_set_qual_cpy(3)
bl_fastq_set_qual_len(3)
bl_fastq_set_seq(3)
bl_fastq_set_seq_ae(3)
bl_fastq_set_seq_array_size(3)
bl_fastq_set_seq_cpy(3)
bl_fastq_set_seq_len(3)
bl_fastq_write(3)
bl_fastx_desc(3)
bl_fastx_desc_len(3)
bl_fastx_free(3)
bl_fastx_init(3)
bl_fastx_plus(3)
bl_fastx_plus_len(3)
bl_fastx_qual(3)
bl_fastx_qual_len(3)
bl_fastx_read(3)
bl_fastx_seq(3)
bl_fastx_seq_len(3)
bl_fastx_set_fasta(3)
bl_fastx_set_fastq(3)
bl_fastx_set_format(3)
bl_fastx_write(3)
bl_gff3_copy(3)
bl_gff3_copy_header(3)
bl_gff3_dup(3)
bl_gff3_extract_attribute(3)
bl_gff3_free(3)
bl_gff3_index_add(3)
bl_gff3_index_seek_reverse(3)
bl_gff3_index_set_array_size(3)
bl_gff3_index_set_count(3)
bl_gff3_index_set_end(3)
bl_gff3_index_set_end_ae(3)
bl_gff3_index_set_end_cpy(3)
bl_gff3_index_set_file_pos(3)
bl_gff3_index_set_file_pos_ae(3)
bl_gff3_index_set_file_pos_cpy(3)
bl_gff3_index_set_seqid(3)
bl_gff3_index_set_seqid_ae(3)
bl_gff3_index_set_seqid_cpy(3)
bl_gff3_index_set_start(3)
bl_gff3_index_set_start_ae(3)
bl_gff3_index_set_start_cpy(3)
bl_gff3_init(3)
bl_gff3_read(3)
bl_gff3_sam_cmp(3)
bl_gff3_sam_overlap(3)
bl_gff3_set_attributes(3)
bl_gff3_set_attributes_ae(3)
bl_gff3_set_attributes_array_size(3)
bl_gff3_set_attributes_cpy(3)
bl_gff3_set_attributes_len(3)
bl_gff3_set_end(3)
bl_gff3_set_feature_id(3)
bl_gff3_set_feature_id_ae(3)
bl_gff3_set_feature_id_cpy(3)
bl_gff3_set_feature_name(3)
bl_gff3_set_feature_name_ae(3)
bl_gff3_set_feature_name_cpy(3)
bl_gff3_set_feature_parent(3)
bl_gff3_set_feature_parent_ae(3)
bl_gff3_set_feature_parent_cpy(3)
bl_gff3_set_file_pos(3)
bl_gff3_set_gene_name_cpy(3)
bl_gff3_set_phase(3)
bl_gff3_set_score(3)
bl_gff3_set_seqid_ae(3)
bl_gff3_set_seqid_cpy(3)
bl_gff3_set_source_ae(3)
bl_gff3_set_source_cpy(3)
bl_gff3_set_start(3)
bl_gff3_set_strand(3)
bl_gff3_set_type_ae(3)
bl_gff3_set_type_cpy(3)
bl_gff3_skip_header(3)
bl_gff3_to_bed(3)
bl_gff3_write(3)
bl_next_start_codon(3)
bl_next_stop_codon(3)
bl_overlap_print(3)
bl_overlap_set_all(3)
bl_overlap_set_feature1_len(3)
bl_overlap_set_feature2_len(3)
bl_overlap_set_overlap_end(3)
bl_overlap_set_overlap_len(3)
bl_overlap_set_overlap_start(3)
bl_pos_list_add_position(3)
bl_pos_list_allocate(3)
bl_pos_list_free(3)
bl_pos_list_from_csv(3)
bl_pos_list_set_array_size(3)
bl_pos_list_set_count(3)
bl_pos_list_set_positions(3)
bl_pos_list_set_positions_ae(3)
bl_pos_list_set_positions_cpy(3)
bl_pos_list_sort(3)
bl_sam_buff_add_alignment(3)
bl_sam_buff_alignment_ok(3)
bl_sam_buff_check_order(3)
bl_sam_buff_free_alignment(3)
bl_sam_buff_init(3)
bl_sam_buff_out_of_order(3)
bl_sam_buff_set_alignments(3)
bl_sam_buff_set_alignments_ae(3)
bl_sam_buff_set_alignments_cpy(3)
bl_sam_buff_set_buff_size(3)
bl_sam_buff_set_buffered_count(3)
bl_sam_buff_set_discarded_alignments(3)
bl_sam_buff_set_discarded_score_sum(3)
bl_sam_buff_set_discarded_trailing(3)
bl_sam_buff_set_mapq_high(3)
bl_sam_buff_set_mapq_low(3)
bl_sam_buff_set_mapq_min(3)
bl_sam_buff_set_mapq_sum(3)
bl_sam_buff_set_max_alignments(3)
bl_sam_buff_set_max_count(3)
bl_sam_buff_set_max_discarded_score(3)
bl_sam_buff_set_min_discarded_score(3)
bl_sam_buff_set_previous_pos(3)
bl_sam_buff_set_previous_rname_ae(3)
bl_sam_buff_set_previous_rname_cpy(3)
bl_sam_buff_set_reads_used(3)
bl_sam_buff_set_total_alignments(3)
bl_sam_buff_set_trailing_alignments(3)
bl_sam_buff_set_unmapped_alignments(3)
bl_sam_buff_shift(3)
bl_sam_copy(3)
bl_sam_copy_header(3)
bl_sam_fclose(3)
bl_sam_fopen(3)
bl_sam_free(3)
bl_sam_gff3_cmp(3)
bl_sam_gff3_overlap(3)
bl_sam_gff_cmp(3)
bl_sam_gff_overlap(3)
bl_sam_init(3)
bl_sam_read(3)
bl_sam_set_cigar(3)
bl_sam_set_cigar_ae(3)
bl_sam_set_cigar_array_size(3)
bl_sam_set_cigar_cpy(3)
bl_sam_set_cigar_len(3)
bl_sam_set_flag(3)
bl_sam_set_mapq(3)
bl_sam_set_pnext(3)
bl_sam_set_pos(3)
bl_sam_set_qname_ae(3)
bl_sam_set_qname_cpy(3)
bl_sam_set_qual(3)
bl_sam_set_qual_ae(3)
bl_sam_set_qual_array_size(3)
bl_sam_set_qual_cpy(3)
bl_sam_set_qual_len(3)
bl_sam_set_rname_ae(3)
bl_sam_set_rname_cpy(3)
bl_sam_set_rnext_ae(3)
bl_sam_set_rnext_cpy(3)
bl_sam_set_seq(3)
bl_sam_set_seq_ae(3)
bl_sam_set_seq_array_size(3)
bl_sam_set_seq_cpy(3)
bl_sam_set_seq_len(3)
bl_sam_set_tlen(3)
bl_sam_skip_header(3)
bl_sam_write(3)
bl_vcf_call_downstream_of_alignment(3)
bl_vcf_call_in_alignment(3)
bl_vcf_call_out_of_order(3)
bl_vcf_free(3)
bl_vcf_get_sample_ids(3)
bl_vcf_init(3)
bl_vcf_parse_field_spec(3)
bl_vcf_read_ss_call(3)
bl_vcf_read_static_fields(3)
bl_vcf_set_alt_ae(3)
bl_vcf_set_alt_count(3)
bl_vcf_set_alt_cpy(3)
bl_vcf_set_chrom_ae(3)
bl_vcf_set_chrom_cpy(3)
bl_vcf_set_filter_ae(3)
bl_vcf_set_filter_cpy(3)
bl_vcf_set_format(3)
bl_vcf_set_format_ae(3)
bl_vcf_set_format_array_size(3)
bl_vcf_set_format_cpy(3)
bl_vcf_set_format_len(3)
bl_vcf_set_id_ae(3)
bl_vcf_set_id_cpy(3)
bl_vcf_set_info(3)
bl_vcf_set_info_ae(3)
bl_vcf_set_info_array_size(3)
bl_vcf_set_info_cpy(3)
bl_vcf_set_info_len(3)
bl_vcf_set_multi_sample_array_sizes(3)
bl_vcf_set_multi_sample_array_sizes_ae(3)
bl_vcf_set_multi_sample_array_sizes_cpy(3)
bl_vcf_set_multi_sample_count(3)
bl_vcf_set_multi_sample_lens(3)
bl_vcf_set_multi_sample_lens_ae(3)
bl_vcf_set_multi_sample_lens_cpy(3)
bl_vcf_set_multi_sample_pointer_array_size(3)
bl_vcf_set_multi_samples(3)
bl_vcf_set_multi_samples_ae(3)
bl_vcf_set_multi_samples_cpy(3)
bl_vcf_set_other_count(3)
bl_vcf_set_phred_buff_size(3)
bl_vcf_set_phred_count(3)
bl_vcf_set_phreds(3)
bl_vcf_set_phreds_ae(3)
bl_vcf_set_phreds_cpy(3)
bl_vcf_set_pos(3)
bl_vcf_set_qual_ae(3)
bl_vcf_set_qual_cpy(3)
bl_vcf_set_ref_ae(3)
bl_vcf_set_ref_count(3)
bl_vcf_set_ref_cpy(3)
bl_vcf_set_single_sample(3)
bl_vcf_set_single_sample_ae(3)
bl_vcf_set_single_sample_array_size(3)
bl_vcf_set_single_sample_cpy(3)
bl_vcf_set_single_sample_len(3)
bl_vcf_skip_header(3)
bl_vcf_skip_meta_data(3)
bl_vcf_write_ss_call(3)
bl_vcf_write_static_fields(3)

pkg-plist 529

include/biolibc/align-accessors.h
include/biolibc/align-mutators.h
include/biolibc/align-rvs.h
include/biolibc/align.h
include/biolibc/bed-accessors.h
include/biolibc/bed-mutators.h
include/biolibc/bed-rvs.h
include/biolibc/bed.h
include/biolibc/biolibc.h
include/biolibc/biostring.h
include/biolibc/fasta-accessors.h
include/biolibc/fasta-mutators.h
include/biolibc/fasta-rvs.h
include/biolibc/fasta.h
include/biolibc/fastq-accessors.h
include/biolibc/fastq-mutators.h
include/biolibc/fastq-rvs.h
include/biolibc/fastq.h
include/biolibc/fastx-accessors.h
include/biolibc/fastx-mutators.h
include/biolibc/fastx-rvs.h
include/biolibc/fastx.h
include/biolibc/gff3-accessors.h
include/biolibc/gff3-index-accessors.h
include/biolibc/gff3-index-mutators.h
include/biolibc/gff3-index-rvs.h
include/biolibc/gff3-index.h
include/biolibc/gff3-mutators.h
include/biolibc/gff3-rvs.h
include/biolibc/gff3.h
include/biolibc/overlap-accessors.h
include/biolibc/overlap-mutators.h
include/biolibc/overlap-rvs.h
include/biolibc/overlap.h
include/biolibc/pos-list-accessors.h
include/biolibc/pos-list-mutators.h
include/biolibc/pos-list-rvs.h
include/biolibc/pos-list.h
include/biolibc/sam-accessors.h
include/biolibc/sam-buff-accessors.h
include/biolibc/sam-buff-mutators.h
include/biolibc/sam-buff-rvs.h
include/biolibc/sam-buff.h
include/biolibc/sam-mutators.h
include/biolibc/sam-rvs.h
include/biolibc/sam.h
include/biolibc/translate.h
include/biolibc/vcf-accessors.h
include/biolibc/vcf-mutators.h
include/biolibc/vcf-rvs.h
include/biolibc/vcf.h
lib/libbiolibc.a
lib/libbiolibc.so
lib/libbiolibc.so.2
lib/libbiolibc.so.2.0
share/man/man3/BL_ALIGN_MAX_MISMATCH_PERCENT.3.gz
share/man/man3/BL_ALIGN_MIN_MATCH.3.gz
share/man/man3/BL_BED_BLOCK_COUNT.3.gz
share/man/man3/BL_BED_BLOCK_SIZES.3.gz
share/man/man3/BL_BED_BLOCK_SIZES_AE.3.gz
share/man/man3/BL_BED_BLOCK_STARTS.3.gz
share/man/man3/BL_BED_BLOCK_STARTS_AE.3.gz
share/man/man3/BL_BED_CHROM.3.gz
share/man/man3/BL_BED_CHROM_AE.3.gz
share/man/man3/BL_BED_CHROM_END.3.gz
share/man/man3/BL_BED_CHROM_START.3.gz
share/man/man3/BL_BED_FIELDS.3.gz
share/man/man3/BL_BED_ITEM_RGB.3.gz
share/man/man3/BL_BED_ITEM_RGB_AE.3.gz
share/man/man3/BL_BED_NAME.3.gz
share/man/man3/BL_BED_NAME_AE.3.gz
share/man/man3/BL_BED_SCORE.3.gz
share/man/man3/BL_BED_STRAND.3.gz
share/man/man3/BL_BED_THICK_END.3.gz
share/man/man3/BL_BED_THICK_START.3.gz
share/man/man3/BL_FASTA_DESC.3.gz
share/man/man3/BL_FASTA_DESC_AE.3.gz
share/man/man3/BL_FASTA_DESC_ARRAY_SIZE.3.gz
share/man/man3/BL_FASTA_DESC_LEN.3.gz
share/man/man3/BL_FASTA_SEQ.3.gz
share/man/man3/BL_FASTA_SEQ_AE.3.gz
share/man/man3/BL_FASTA_SEQ_ARRAY_SIZE.3.gz
share/man/man3/BL_FASTA_SEQ_LEN.3.gz
share/man/man3/BL_FASTQ_DESC.3.gz
share/man/man3/BL_FASTQ_DESC_AE.3.gz
share/man/man3/BL_FASTQ_DESC_ARRAY_SIZE.3.gz
share/man/man3/BL_FASTQ_DESC_LEN.3.gz
share/man/man3/BL_FASTQ_PLUS.3.gz
share/man/man3/BL_FASTQ_PLUS_AE.3.gz
share/man/man3/BL_FASTQ_PLUS_ARRAY_SIZE.3.gz
share/man/man3/BL_FASTQ_PLUS_LEN.3.gz
share/man/man3/BL_FASTQ_QUAL.3.gz
share/man/man3/BL_FASTQ_QUAL_AE.3.gz
share/man/man3/BL_FASTQ_QUAL_ARRAY_SIZE.3.gz
share/man/man3/BL_FASTQ_QUAL_LEN.3.gz
share/man/man3/BL_FASTQ_SEQ.3.gz
share/man/man3/BL_FASTQ_SEQ_AE.3.gz
share/man/man3/BL_FASTQ_SEQ_ARRAY_SIZE.3.gz
share/man/man3/BL_FASTQ_SEQ_LEN.3.gz
share/man/man3/BL_FASTX_FASTA.3.gz

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