BSD Portsbiology/fasda 0.2.0.1 FreeBSD
Fast and simple differential analysis
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- BSD2CLAUSE
- Categories
- biology
- Package size
- 33.8 KiB, 92.7 KiB installed
Description
FASDA aims to provide a fast and simple differential analysis tool that just works and does not require any knowledge beyond basic Unix command-line skills. The code is written entirely in C to maximize efficiency and portability, and to provide a simple command-line user interface.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/fasda | 0.2.0.1 |
| NetBSD | biology/fasda | 0.1.5.8 |
| DragonFly | biology/fasda | 0.1.5_1 |
| HardenedBSD | biology/fasda | 0.2.0.1 |
| GhostBSD | biology/fasda | 0.2.0.1 |
Install
Binary package:
pkg install fasdaFrom the ports tree:
cd /usr/ports/biology/fasda/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= fasda>0:biology/fasdaPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.2.0.1 | 0.2.0.1 | 0.1.2 | 0.2.0.1 | 0.2.0.1 |
| FreeBSD:14:quarterly | 0.2.0.1 | 0.2.0.1 | n/a | 0.2.0.1 | 0.2.0.1 |
| FreeBSD:15:latest | 0.2.0.1 | 0.2.0.1 | n/a | 0.2.0.1 | 0.2.0.1 |
| FreeBSD:15:quarterly | 0.2.0.1 | 0.2.0.1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.2.0.1 | 0.2.0.1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Library 2
libxtend.so: devel/libxtendlibbiolibc.so: biology/biolibc
Runtime 1
stringtie>0: biology/stringtie
The full lists below include those, and their dependencies in turn.
Build dependencies 2
Run dependencies 3
Required by 3
Configuration
No options to configure.
- USES
- localbase
- Service scripts
- none
Files
Manual pages 6
- fasda(1)
- fasda-abundance(1)
- fasda-filter(1)
- fasda-fold-change(1)
- fasda-normalize(1)
- fasda-pval-sim(1)
pkg-plist 12
- bin/fasda
- libexec/fasda/abundance
- libexec/fasda/filter
- libexec/fasda/fold-change
- libexec/fasda/normalize
- libexec/fasda/pval-sim
- share/man/man1/fasda-abundance.1.gz
- share/man/man1/fasda-filter.1.gz
- share/man/man1/fasda-fold-change.1.gz
- share/man/man1/fasda-normalize.1.gz
- share/man/man1/fasda-pval-sim.1.gz
- share/man/man1/fasda.1.gz
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| auerlab-fasda-0.2.0-1-ga7d14ad_GH0.tar.gz | 1.869807e+06 | fbc12198337617a2f09a95fda627861e8ed7fa2f345ccee218879b5c58cabea7 |
Commit history 0
No commits in the history this site was built from.