BSD Ports

biology/vcf2hap 0.1.6.7_1 FreeBSD

Generate .hap file from VCF for haplohseq

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
License
BSD2CLAUSE
Categories
biology
Package size
6.1 KiB, 11.1 KiB installed

Description

vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file is required by haplohseq. vcf2hap is extremely fast and requires a trivial amount of memory regardless of the size of the VCF file.

In the other systems

SystemPortVersion
FreeBSDbiology/vcf2hap0.1.6.7_1
NetBSDbiology/vcf2hap0.1.6.14
DragonFlybiology/vcf2hap0.1.6.7_1
HardenedBSDbiology/vcf2hap0.1.6.7_1
GhostBSDbiology/vcf2hap0.1.6.7_1

Install

Binary package:

pkg install vcf2hap

From the ports tree:

cd /usr/ports/biology/vcf2hap/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	vcf2hap>0:biology/vcf2hap

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest0.1.6.7_10.1.6.7_10.1.60.1.6.7_10.1.6.7_1
FreeBSD:14:quarterly0.1.6.7_10.1.6.7_1n/a0.1.6.7_10.1.6.7_1
FreeBSD:15:latest0.1.6.7_10.1.6.7_1n/a0.1.6.7_10.1.6.7_1
FreeBSD:15:quarterly0.1.6.7_10.1.6.7_1n/an/an/a
FreeBSD:16:latest0.1.6.7_10.1.6.7_1n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

As this port's Makefile names them.

Library 2

The full lists below include those, and their dependencies in turn.

Build dependencies 2
Run dependencies 2
Required by 1

Configuration

No options to configure.

Service scripts
none

Files

distinfo 1
FileSizeSHA256
auerlab-vcf2hap-0.1.6-7-gfda1765_GH0.tar.gz201240614f4b3c2b1bb29bf52ed0eb3a6df64e8de9e16e651b503e10b9562193f308de

Commit history 0

No commits in the history this site was built from.