BSD Portsbiology/ad2vcf 0.1.6.19 FreeBSD
Add allelic depth info from a SAM stream to a VCF file
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- BSD2CLAUSE
- Categories
- biology
- Package size
- 9.8 KiB, 22.1 KiB installed
Description
ad2vcf extracts allelic depth info from a SAM stream and adds it to a corresponding single-sample VCF file.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/ad2vcf | 0.1.6.19 |
| NetBSD | biology/ad2vcf | 0.1.6.20 |
| DragonFly | biology/ad2vcf | 0.1.6.19 |
| HardenedBSD | biology/ad2vcf | 0.1.6.19 |
| GhostBSD | biology/ad2vcf | 0.1.6.19 |
Install
Binary package:
pkg install ad2vcfFrom the ports tree:
cd /usr/ports/biology/ad2vcf/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= ad2vcf>0:biology/ad2vcfPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.1.6.19 | 0.1.6.19 | 0.1.6 | 0.1.6.19 | 0.1.6.19 |
| FreeBSD:14:quarterly | 0.1.6.19 | 0.1.6.19 | n/a | 0.1.6.19 | 0.1.6.19 |
| FreeBSD:15:latest | 0.1.6.19 | 0.1.6.19 | n/a | 0.1.6.19 | 0.1.6.19 |
| FreeBSD:15:quarterly | 0.1.6.19 | 0.1.6.19 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.1.6.19 | 0.1.6.19 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Library 2
libbiolibc.so: biology/biolibclibxtend.so: devel/libxtend
The full lists below include those, and their dependencies in turn.
Build dependencies 2
Run dependencies 2
Required by 1
Configuration
No options to configure.
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| auerlab-ad2vcf-0.1.6-19-gf42ae91_GH0.tar.gz | 16176 | d71a584e8b74e853a8595ddfa7327959b2fc991b5c6034e9402024384e7a1297 |
Commit history 0
No commits in the history this site was built from.