BSD Ports

biology/dsr-pdb 1.0.3_19 FreeBSD

Simple C++ PDB reader (reads the protein description format)

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Last update
Commit
97a84ef467
License
LGPL21
Categories
biology

Description

dsr-pdb is a simple C++ PDB reader along with a couple of programs which use it to manipulate pdb files (applying a rigid transform or splitting/merging). The are aimed at people interested in proteins from a geometric viewpoint as they allow easy access to the geometry and bond structure in addition of the biological information. The reader has two modes for reading/writing a pdb file. The simplest one, through the Protein class just reads and writes a single protein from/to a pdb file (which must have only one chain, but can have multiple models). The second, through the PDB class can handle pdb files with multiple models and herogens (although these are just passed through and not currently interpreted).

In the other systems

The newest version among them is 1.0.3, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
FreeBSDbiology/dsr-pdb1.0.3_19 newestnone known-[email protected]2026-09-29
DragonFlybiology/dsr-pdb1.0.3_15 newestnone known-[email protected]-
HardenedBSDbiology/dsr-pdb1.0.3_19 newestno data-[email protected]-
GhostBSDbiology/dsr-pdb1.0.3_18 newestno data-[email protected]-

Install

Binary package:

pkg install dsr-pdb

From the ports tree:

cd /usr/ports/biology/dsr-pdb/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	dsr-pdb>0:biology/dsr-pdb
LIB_DEPENDS=	libdsrpdb.so:biology/dsr-pdb

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest-1.0.3_191.0.3_81.0.3_161.0.3_19
FreeBSD:14:quarterly-1.0.3_19n/a1.0.3_161.0.3_19
FreeBSD:15:latest-1.0.3_19n/a1.0.3_161.0.3_16
FreeBSD:15:quarterly-1.0.3_19n/an/an/a
FreeBSD:16:latest-1.0.3_19n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

As this port's Makefile names them.

Library 1

The full lists below include those, and their dependencies in turn.

Build dependencies 7
Run dependencies 4

No port depends on this one.

Configuration

No options to configure.

USES
compiler:c++11-lang gmake libtool localbase:ldflags tar:tgz
Service scripts
none

Files

pkg-plist 28
  • bin/pdb_align
  • bin/pdb_align_points
  • bin/pdb_cat
  • bin/pdb_distance
  • bin/pdb_distance_matrix
  • bin/pdb_split
  • bin/pdb_stats
  • bin/pdb_transform
  • include/dsrpdb/Atom.h
  • include/dsrpdb/Matrix.h
  • include/dsrpdb/Model.h
  • include/dsrpdb/PDB.h
  • include/dsrpdb/PDB_index.h
  • include/dsrpdb/Point.h
  • include/dsrpdb/Protein.h
  • include/dsrpdb/Residue.h
  • include/dsrpdb/Transform.h
  • include/dsrpdb/align.h
  • include/dsrpdb/config.h
  • include/dsrpdb/distance.h
  • include/dsrpdb/geometry.h
  • include/dsrpdb/geometry_internal.h
  • include/dsrpdb/iterator.h
  • include/dsrpdb/label.h
  • include/dsrpdb/labeled_index.h
  • include/dsrpdb/small_map.h
  • lib/libdsrpdb.a
  • lib/libdsrpdb.so
distinfo 1
FileSizeSHA256
dsr-pdb-1.0.3/dsr-pdb.tgz958360e9fea9c4b8fc0255ee0e2bca11ab267d10cc9687cf5ba515c704875bcee21837
Master sites 1
  • https://graphics.stanford.edu/~drussel/

Commit history 2

DateCommitCreditsLog message
97a84ef467 Dima Panov */*: update boost consumers after boost-1.92
213840c151 Dima Panov */*: bump consumers after devel/boost update