BSD Portsbiology/fastahack 1.0.0 FreeBSD
Utility for indexing and sequence extraction from FASTA files
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- GPLv2
- Categories
- biology
- Package size
- 52.6 KiB, 232.8 KiB installed
Description
Fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/fastahack | 1.0.0 |
| NetBSD | wip/fastahack | 0.0.0.20160702 |
| DragonFly | biology/fastahack | 1.0.0 |
| HardenedBSD | biology/fastahack | 1.0.0 |
| GhostBSD | biology/fastahack | 1.0.0 |
Install
Binary package:
pkg install fastahackFrom the ports tree:
cd /usr/ports/biology/fastahack/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= fastahack>0:biology/fastahackPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 |
| FreeBSD:14:quarterly | 1.0.0 | 1.0.0 | n/a | 1.0.0 | 1.0.0 |
| FreeBSD:15:latest | 1.0.0 | 1.0.0 | n/a | 1.0.0 | 1.0.0 |
| FreeBSD:15:quarterly | 1.0.0 | 1.0.0 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.0.0 | 1.0.0 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Required by 1
Configuration
No options to configure.
- Service scripts
- none
Files
pkg-plist 7
- bin/fastahack
- include/fastahack/Fasta.h
- include/fastahack/LargeFileSupport.h
- include/fastahack/Region.h
- include/fastahack/disorder.h
- include/fastahack/split.h
- lib/libfastahack.a
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| ekg-fastahack-v1.0.0_GH0.tar.gz | 18766 | cc1c04729b0c8ba3647cbb7e15e2b490ce701d73773f30f5892d68c36a1dceae |