BSD Ports

biology/freebayes 1.3.10 FreeBSD

Bayesian haplotype-based polymorphism discovery and genotyping

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Last update
Commit
2414383046
License
MIT
Categories
biology
Package size
983.8 KiB, 2913.4 KiB installed

Description

FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.

In the other systems

The newest version among them is 1.3.10, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
FreeBSDbiology/freebayes1.3.10 newestnone known-[email protected]2026-10-08
DragonFlybiology/freebayes1.3.6_2 behind since 2026-09-01none known-[email protected]-
HardenedBSDbiology/freebayes1.3.10 newestno data-[email protected]-
GhostBSDbiology/freebayes1.3.10 newestno data-[email protected]-

Version history 1

  1. 1.3.10 92b409e96b

Upstream's version as each commit to the port's Makefile set it, or as this site first saw it in the system's packages; the tree's own revisions are not versions here.

Install

Binary package:

pkg install freebayes

From the ports tree:

cd /usr/ports/biology/freebayes/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	freebayes>0:biology/freebayes

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest1.3.101.3.101.3.6_1--
FreeBSD:14:quarterly1.3.101.3.10n/a--
FreeBSD:15:latest1.3.101.3.10n/a--
FreeBSD:15:quarterly1.3.101.3.10n/an/an/a
FreeBSD:16:latest1.3.101.3.10n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

As this port's Makefile names them.

Build 8

Library 1

The full lists below include those, and their dependencies in turn.

Build dependencies 30
Run dependencies 12
Required by 1

Configuration

No options to configure.

USES
compiler:c++14-lang localbase meson perl5 pkgconfig
Service scripts
none

Message after installing

===>   NOTICE:

The freebayes port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Files

distinfo 1
FileSizeSHA256
ekg-freebayes-v1.3.10_GH0.tar.gz2.937728e+0631900e4ad23f471310838f0ae6f6020b159bf5fa3d9826de285c4c91bfe0eeb2

Commit history 2

DateCommitCreditsLog message
2414383046 Jason W. Bacon Release numerous ports to ports@
I've been retired for a few years, and it is unlikely I will be doing any more scientific computing support in the future. I have continued to maintain ~160 ports to the best of my ability, mainly as a favor to the community, but I can no longer justify the time and effort required. I am therefore releasing most of my scientific ports, along with a few others, to ports@. I will continue to maintain ports I am actively using and those for which I am upstream.
92b409e96b Jason W. Bacon biology/freebayes: Update to 1.3.10
A few fixes and enhancements Changes: https://github.com/freebayes/freebayes/releases Reported by: portscout