BSD Portsbiology/libgff 2.0.1 FreeBSD
GFF/GTF parsing library based on GCLib
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- BSL
- Categories
- biology
- Package size
- 135.0 KiB, 581.4 KiB installed
Description
This is an attempt to perform a simple "libraryfication" of the GFF/GTF parsing code that is used in GFFRead codebase. There are not many (any?) relatively lightweight GTF/GFF parsers exposing a C++ interface, and the goal of this library is to provide this functionality without the necessity of drawing in a heavy-weight dependency like SeqAn. Note: This library draws directly from the code in GFFRead and GCLib, and exists primarily to remove functionality (and hence code) that is unnecessary for our downstream purposes. In the future, it may be appropriate to just replace this library wholesale with GCLib.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/libgff | 2.0.1 |
| DragonFly | biology/libgff | 2.0.0 |
Install
Binary package:
pkg install libgffFrom the ports tree:
cd /usr/ports/biology/libgff/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= libgff>0:biology/libgffPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.0.1 | 2.0.1 | 2.0.0 | 2.0.0 | 2.0.1 |
| FreeBSD:14:quarterly | 2.0.1 | 2.0.1 | n/a | 2.0.0 | 2.0.1 |
| FreeBSD:15:latest | 2.0.1 | 2.0.1 | n/a | 2.0.0 | 2.0.0 |
| FreeBSD:15:quarterly | 2.0.1 | 2.0.1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.0.1 | 2.0.1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 15
Required by 1
Configuration
No options to configure.
- USES
- cmake
- Service scripts
- none
Files
pkg-plist 14
- include/GArgs.h
- include/GBase.h
- include/GFaSeqGet.h
- include/GFastaIndex.h
- include/GHash.hh
- include/GList.hh
- include/GStr.h
- include/GVec.hh
- include/codons.h
- include/gdna.h
- include/gff.h
- lib/libgff.a
- lib/libgff/cmake/libgffConfig.cmake
- lib/libgff/cmake/libgffConfigVersion.cmake
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| COMBINE-lab-libgff-v2.0.1_GH0.tar.gz | 102283 | 96d2bda64aaf9cf7b6c1a42205e408b0ef2a353ba42dad560db215e7ec105e2e |