biology/libsbml 5.21.2 FreeBSD

API Library for Working with SBML File

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
Last update: 2026-09-20
Commit: 55d1647a96
License: LGPL21
Categories: biology, devel
Package size: 4460.5 KiB, 33803.0 KiB installed

Description

LibSBML is an open-source programming library to help you read, write, manipulate, translate, and validate SBML files and data streams. It is not an application itself (though it does come with example programs), but rather a library you can embed in your own applications.

LibSBML understands all Levels and Versions of SBML, as well as the SBML Layout proposal by Gauges, Rost, Sahle and Wegner. It's written in ISO C and C++ but can be used from all the languages listed in the right-hand box.

In the other systems

System

Port

Version

FreeBSD

biology/libsbml

5.21.2

DragonFly

biology/libsbml

5.20.4_1

Install

Binary package:

pkg install libsbml

From the ports tree:

cd /usr/ports/biology/libsbml/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	libsbml>0:biology/libsbml
LIB_DEPENDS=	libsbml.so:biology/libsbml

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

5.21.2

5.19.0_2

5.20.5_1

5.21.2

FreeBSD:14:quarterly

5.21.2

n/a

5.20.5_1

5.21.2

FreeBSD:15:latest

5.21.2

n/a

5.20.5_1

FreeBSD:15:quarterly

5.21.2

n/a

FreeBSD:16:latest

5.21.2

n/a

FreeBSD:16:quarterly

n/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 18

Run dependencies 8

Required by 5

Configuration

Options name: biology_libsbml

Option

Default

Description

EXAMPLES

off

Build and/or install examples

EXPAT

off

XML parser support via Expat

LIBXML2

XML parser support via libxml2

PYTHON

Python bindings or support

RUBY

off

Ruby bindings or support

XERCES

off

XML parser support via Xerces

USES: cmake:testing cpe iconv:build
Service scripts: none

Files

pkg-plist 400

include/sbml/AlgebraicRule.h
include/sbml/AssignmentRule.h
include/sbml/Compartment.h
include/sbml/CompartmentType.h
include/sbml/Constraint.h
include/sbml/Delay.h
include/sbml/Event.h
include/sbml/EventAssignment.h
include/sbml/ExpectedAttributes.h
include/sbml/FunctionDefinition.h
include/sbml/InitialAssignment.h
include/sbml/KineticLaw.h
include/sbml/ListOf.h
include/sbml/LocalParameter.h
include/sbml/Model.h
include/sbml/ModifierSpeciesReference.h
include/sbml/Parameter.h
include/sbml/Priority.h
include/sbml/RateRule.h
include/sbml/Reaction.h
include/sbml/Rule.h
include/sbml/SBMLConstructorException.h
include/sbml/SBMLDocument.h
include/sbml/SBMLError.h
include/sbml/SBMLErrorLog.h
include/sbml/SBMLErrorTable.h
include/sbml/SBMLNamespaces.h
include/sbml/SBMLReader.h
include/sbml/SBMLTransforms.h
include/sbml/SBMLTypeCodes.h
include/sbml/SBMLTypes.h
include/sbml/SBMLVisitor.h
include/sbml/SBMLWriter.h
include/sbml/SBO.h
include/sbml/SBase.h
include/sbml/SimpleSpeciesReference.h
include/sbml/Species.h
include/sbml/SpeciesReference.h
include/sbml/SpeciesType.h
include/sbml/StoichiometryMath.h
include/sbml/SyntaxChecker.h
include/sbml/Trigger.h
include/sbml/Unit.h
include/sbml/UnitDefinition.h
include/sbml/UnitKind.h
include/sbml/annotation/CVTerm.h
include/sbml/annotation/Date.h
include/sbml/annotation/ModelCreator.h
include/sbml/annotation/ModelHistory.h
include/sbml/annotation/RDFAnnotation.h
include/sbml/annotation/RDFAnnotationParser.h
include/sbml/common/common-documentation.h
include/sbml/common/common-sbmlerror-codes.h
include/sbml/common/common.h
include/sbml/common/extern.h
include/sbml/common/libsbml-config-common.h
include/sbml/common/libsbml-config-packages.h
include/sbml/common/libsbml-config.h
include/sbml/common/libsbml-namespace.h
include/sbml/common/libsbml-package.h
include/sbml/common/libsbml-version.h
include/sbml/common/operationReturnValues.h
include/sbml/common/sbmlfwd.h
include/sbml/compress/CompressCommon.h
include/sbml/compress/InputDecompressor.h
include/sbml/compress/OutputCompressor.h
include/sbml/compress/bzfstream.h
include/sbml/compress/crypt.h
include/sbml/compress/ioapi.h
include/sbml/compress/ioapi_mem.h
include/sbml/compress/iowin32.h
include/sbml/compress/unzip.h
include/sbml/compress/zfstream.h
include/sbml/compress/zip.h
include/sbml/compress/zipfstream.h
include/sbml/conversion/ConversionOption.h
include/sbml/conversion/ConversionProperties.h
include/sbml/conversion/ExpressionAnalyser.h
include/sbml/conversion/SBMLConverter.h
include/sbml/conversion/SBMLConverterRegister.h
include/sbml/conversion/SBMLConverterRegistry.h
include/sbml/conversion/SBMLConverterTypes.h
include/sbml/conversion/SBMLFunctionDefinitionConverter.h
include/sbml/conversion/SBMLIdConverter.h
include/sbml/conversion/SBMLInferUnitsConverter.h
include/sbml/conversion/SBMLInitialAssignmentConverter.h
include/sbml/conversion/SBMLLevel1Version1Converter.h
include/sbml/conversion/SBMLLevelVersionConverter.h
include/sbml/conversion/SBMLLocalParameterConverter.h
include/sbml/conversion/SBMLRateOfConverter.h
include/sbml/conversion/SBMLRateRuleConverter.h
include/sbml/conversion/SBMLReactionConverter.h
include/sbml/conversion/SBMLRuleConverter.h
include/sbml/conversion/SBMLStripPackageConverter.h
include/sbml/conversion/SBMLUnitsConverter.h
include/sbml/extension/ASTBasePlugin.h
include/sbml/extension/ISBMLExtensionNamespaces.h
include/sbml/extension/RegisterExtensions.h
include/sbml/extension/SBMLDocumentPlugin.h
include/sbml/extension/SBMLDocumentPluginNotRequired.h

The first 100 are listed.

distinfo 1

File

Size

SHA256

sbmlteam-libsbml-v5.21.2_GH0.tar.gz

2.8897375e+07

7649262405660a16161db8324ae817e3509fca072c6a06a80d6487d30f97d3be

Commit history 1

Date Commit Credits Log message

2026-09-20

55d1647a96

Po-Chuan Hsieh

biology/libsbml: Update to 5.21.2

Changes: https://github.com/sbmlteam/libsbml/releases