BSD Portsbiology/megahit 1.2.9.22 FreeBSD
Ultra-fast single-node large and complex metagenomics assembly
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- GPLv3
- Categories
- biology
- Package size
- 341.0 KiB, 3671.8 KiB installed
Description
MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize a CUDA-enabled GPU to accelerate its SdBG contstruction.
In the other systems
The newest version among them is 1.2.9.22, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| FreeBSD | biology/megahit | 1.2.9.22 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/megahit | 1.2.9_1 behind since 2026-09-19 | none known | - | [email protected] | - |
| HardenedBSD | biology/megahit | 1.2.9.22 newest | no data | - | [email protected] | - |
| GhostBSD | biology/megahit | 1.2.9.22 newest | no data | - | [email protected] | - |
Version history 1
Upstream's version as each commit to the port's Makefile set it, or as this site first saw it in the system's packages; the tree's own revisions are not versions here.
Install
Binary package:
pkg install megahitFrom the ports tree:
cd /usr/ports/biology/megahit/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= megahit>0:biology/megahitPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.2.9.22 | 1.2.9.22 | - | - | - |
| FreeBSD:14:quarterly | 1.2.9.22 | 1.2.9.22 | n/a | - | - |
| FreeBSD:15:latest | 1.2.9.22 | 1.2.9.22 | n/a | - | - |
| FreeBSD:15:quarterly | 1.2.9.22 | 1.2.9.22 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.2.9.22 | 1.2.9.22 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 15
Run dependencies 7
No port depends on this one.
Configuration
No options to configure.
- USES
- cmake python shebangfix
- Service scripts
- none
Message after installing
===> NOTICE: The megahit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing
Files
pkg-plist 14
- bin/megahit
- bin/megahit_core
- bin/megahit_core_no_hw_accel
- bin/megahit_core_popcnt
- bin/megahit_toolkit
- share/megahit/test_data/empty.fa
- share/megahit/test_data/generate_random_fasta.py
- share/megahit/test_data/loop.fa
- share/megahit/test_data/r1.il.fa.gz
- share/megahit/test_data/r2.il.fa.bz2
- share/megahit/test_data/r3_1.fa
- share/megahit/test_data/r3_2.fa
- share/megahit/test_data/r4.fa
- share/megahit/test_data/ref.fa
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| voutcn-megahit-v1.2.9-22-gc77d45c_GH0.tar.gz | 268946 | 1f293e7e40dbd6ab3afcc4f69196226df9193047405855488cc6f82e9407b4c7 |