biology/p5-Bio-DB-EMBL 1.7.4 FreeBSD

Database object interface for EMBL entry retrieval

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: ART10, GPLv1+
Categories: biology, perl5
Package size: 12.6 KiB, 43.4 KiB installed

Description

Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the EMBL database using the dbfetch script at EBI.

In order to make changes transparent we have host type (currently only ebi) and location (defaults to ebi) separated out. This allows later additions of more servers in different geographical locations.

The functionality of this module is inherited from Bio::DB::DBFetch which implements Bio::DB::WebDBSeqI.

In the other systems

The newest version among them is 1.7.4, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

FreeBSD

biology/p5-Bio-DB-EMBL

1.7.4 newest

none known

[email protected]

OpenBSD

biology/p5-Bio-DB-EMBL

1.7.4 newest

no data

The OpenBSD ports mailing-list <[email protected]>

DragonFly

biology/p5-Bio-DB-EMBL

1.7.4 newest

none known

[email protected]

HardenedBSD

biology/p5-Bio-DB-EMBL

1.7.4 newest

no data

[email protected]

GhostBSD

biology/p5-Bio-DB-EMBL

1.7.4 newest

no data

[email protected]

Compare across BSDs

Install

Binary package:

pkg install p5-Bio-DB-EMBL

From the ports tree:

cd /usr/ports/biology/p5-Bio-DB-EMBL/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	p5-Bio-DB-EMBL>0:biology/p5-Bio-DB-EMBL

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository	aarch64	amd64	armv6	armv7	i386
FreeBSD:14:latest	1.7.4	1.7.4	1.7.4	1.7.4	1.7.4
FreeBSD:14:quarterly	1.7.4	1.7.4	n/a	1.7.4	1.7.4
FreeBSD:15:latest	1.7.4	1.7.4	n/a	1.7.4	1.7.4
FreeBSD:15:quarterly	1.7.4	1.7.4	n/a	n/a	n/a
FreeBSD:16:latest	1.7.4	1.7.4	n/a	n/a	n/a
FreeBSD:16:quarterly	n/a	n/a	n/a	n/a	n/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/p5-Bio-DB-EMBL"]
  me --> d0["biology/p5-BioPerl"]
  me --> d1["converters/libiconv"]
  me --> d2["converters/p5-Encode-Locale"]
  me --> d3["converters/p5-MIME-Base32"]
  me --> d4["converters/p5-MIME-Base64"]
  me --> d5["converters/p5-Text-Iconv"]
  me --> d6["devel/p5-Algorithm-Diff"]
  me --> d7["devel/p5-Class-Data-Inheritable"]
  me -.-> dmore(["68 more"])
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

As this port's Makefile names them.

Build 1

p5-BioPerl>=0 : biology/p5-BioPerl

Runtime 1

p5-BioPerl>=0 : biology/p5-BioPerl

Test 2

p5-Test-Most>=0 : devel/p5-Test-Most
p5-Test-RequiresInternet>=0 : devel/p5-Test-RequiresInternet

The full lists below include those, and their dependencies in turn.

Build dependencies 76

Run dependencies 76

No port depends on this one.

Configuration

No options to configure.

USES: perl5
Service scripts: none

Files

pkg-plist 2

%%SITE_PERL%%/Bio/DB/EMBL.pm
%%PERL5_MAN3%%/Bio::DB::EMBL.3.gz

distinfo 1

File

Size

SHA256

Bio-DB-EMBL-1.7.4.tar.gz

13927

fce080c4b3db7bcc529fd0cf0d29700d0b86ef8bbe7f77ad87f429a3ae7e1a27

Master sites 1

CPAN

Commit history 0

No commits in the history this site was built from.