biology/p5-Bio-Das 1.17_4 FreeBSD

Client-side library for Distributed Genome Annotation System

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: ART10, GPLv1+
Categories: biology, perl5
Package size: 116.9 KiB, 305.1 KiB installed

Description

Bio::Das provides access to genome sequencing and annotation databases that export their data in Distributed Annotation System (DAS) format version 1.5. This system is described at http://biodas.org. Both unencrypted (http:) and SSL-encrypted (https:) DAS servers are sup- ported. (To run SSL, you will need IO::Socket::SSL and Net::SSLeay installed).

In the other systems

The newest version among them is 1.17, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

FreeBSD

biology/p5-Bio-Das

1.17_4 newest

none known

[email protected]

DragonFly

biology/p5-Bio-Das

1.17_4 newest

none known

[email protected]

HardenedBSD

biology/p5-Bio-Das

1.17_4 newest

no data

[email protected]

GhostBSD

biology/p5-Bio-Das

1.17_4 newest

no data

[email protected]

Install

Binary package:

pkg install p5-Bio-Das

From the ports tree:

cd /usr/ports/biology/p5-Bio-Das/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	p5-Bio-Das>0:biology/p5-Bio-Das

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

1.17_4

FreeBSD:14:quarterly

1.17_4

n/a

1.17_4

FreeBSD:15:latest

1.17_4

n/a

1.17_4

FreeBSD:15:quarterly

1.17_4

n/a

FreeBSD:16:latest

1.17_4

n/a

FreeBSD:16:quarterly

n/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/p5-Bio-Das"]
  me --> d0["biology/p5-BioPerl"]
  me --> d1["converters/libiconv"]
  me --> d2["converters/p5-Encode-Locale"]
  me --> d3["converters/p5-MIME-Base32"]
  me --> d4["converters/p5-MIME-Base64"]
  me --> d5["converters/p5-Text-Iconv"]
  me --> d6["devel/p5-Algorithm-Diff"]
  me --> d7["devel/p5-Class-Data-Inheritable"]
  me -.-> dmore(["68 more"])
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

As this port's Makefile names them.

Build 3

p5-BioPerl>=0 : biology/p5-BioPerl
p5-HTML-Parser>=3 : www/p5-HTML-Parser
p5-libwww>=5 : www/p5-libwww

Runtime 3

p5-BioPerl>=0 : biology/p5-BioPerl
p5-HTML-Parser>=3 : www/p5-HTML-Parser
p5-libwww>=5 : www/p5-libwww

The full lists below include those, and their dependencies in turn.

Build dependencies 76

Run dependencies 76

No port depends on this one.

Configuration

No options to configure.

USES: perl5
Service scripts: none

Files

pkg-plist 52

%%SITE_PERL%%/Bio/Das.pm
%%SITE_PERL%%/Bio/Das/DSN.pm
%%SITE_PERL%%/Bio/Das/Request.pm
%%SITE_PERL%%/Bio/Das/Stylesheet.pm
%%SITE_PERL%%/Bio/Das/Map.pm
%%SITE_PERL%%/Bio/Das/FeatureIterator.pm
%%SITE_PERL%%/Bio/Das/Segment.pm
%%SITE_PERL%%/Bio/Das/Type.pm
%%SITE_PERL%%/Bio/Das/Feature.pm
%%SITE_PERL%%/Bio/Das/TypeHandler.pm
%%SITE_PERL%%/Bio/Das/Util.pm
%%SITE_PERL%%/Bio/Das/Request/Sequences.pm
%%SITE_PERL%%/Bio/Das/Request/Dnas.pm
%%SITE_PERL%%/Bio/Das/Request/Types.pm
%%SITE_PERL%%/Bio/Das/Request/Feature2Segments.pm
%%SITE_PERL%%/Bio/Das/Request/Features.pm
%%SITE_PERL%%/Bio/Das/Request/Dsn.pm
%%SITE_PERL%%/Bio/Das/Request/Entry_points.pm
%%SITE_PERL%%/Bio/Das/Request/Stylesheet.pm
%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage.pm
%%SITE_PERL%%/Bio/Das/AGPServer/Proxy.pm
%%SITE_PERL%%/Bio/Das/AGPServer/Parser.pm
%%SITE_PERL%%/Bio/Das/AGPServer/Daemon.pm
%%SITE_PERL%%/Bio/Das/AGPServer/Config.pm
%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm
%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm
%%SITE_PERL%%/Bio/Das/HTTP/Fetch.pm
%%PERL5_MAN3%%/Bio::Das.3.gz
%%PERL5_MAN3%%/Bio::Das::AGPServer::Config.3.gz
%%PERL5_MAN3%%/Bio::Das::AGPServer::Daemon.3.gz
%%PERL5_MAN3%%/Bio::Das::AGPServer::Parser.3.gz
%%PERL5_MAN3%%/Bio::Das::AGPServer::SQLStorage.3.gz
%%PERL5_MAN3%%/Bio::Das::AGPServer::SQLStorage::CSV::DB.3.gz
%%PERL5_MAN3%%/Bio::Das::AGPServer::SQLStorage::MySQL::DB.3.gz
%%PERL5_MAN3%%/Bio::Das::DSN.3.gz
%%PERL5_MAN3%%/Bio::Das::Feature.3.gz
%%PERL5_MAN3%%/Bio::Das::FeatureIterator.3.gz
%%PERL5_MAN3%%/Bio::Das::HTTP::Fetch.3.gz
%%PERL5_MAN3%%/Bio::Das::Map.3.gz
%%PERL5_MAN3%%/Bio::Das::Request.3.gz
%%PERL5_MAN3%%/Bio::Das::Request::Dnas.3.gz
%%PERL5_MAN3%%/Bio::Das::Request::Dsn.3.gz
%%PERL5_MAN3%%/Bio::Das::Request::Entry_points.3.gz
%%PERL5_MAN3%%/Bio::Das::Request::Feature2Segments.3.gz
%%PERL5_MAN3%%/Bio::Das::Request::Sequences.3.gz
%%PERL5_MAN3%%/Bio::Das::Request::Stylesheet.3.gz
%%PERL5_MAN3%%/Bio::Das::Request::Types.3.gz
%%PERL5_MAN3%%/Bio::Das::Segment.3.gz
%%PERL5_MAN3%%/Bio::Das::Stylesheet.3.gz
%%PERL5_MAN3%%/Bio::Das::Type.3.gz
%%PERL5_MAN3%%/Bio::Das::TypeHandler.3.gz
%%PERL5_MAN3%%/Bio::Das::Util.3.gz

distinfo 1

File

Size

SHA256

Bio-Das-1.17.tar.gz

105270

cfe4980e47021e69ae3ba26c88dde29aef10f934f5ca10e9ffd1a99b472792f7

Master sites 1

CPAN

Commit history 0

No commits in the history this site was built from.