biology/prodigy-lig 1.1.4 FreeBSD
Prediction of protein-small molecule binding affinities
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
8d3d69d345- License
- APACHE20
- Categories
- biology, python
- Package size
- 22.6 KiB, 101.7 KiB installed
Description
PRODIGY-LIG (PROtein binDIng enerGY prediction - LIGands) is a structure-based method for the prediction of binding affinity in protein-small ligand (such as drugs or metabolites) complexes.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/prodigy-lig | 1.1.4 |
| DragonFly | biology/prodigy-lig | 1.1.3 |
| HardenedBSD | biology/prodigy-lig | 1.1.4 |
| GhostBSD | biology/prodigy-lig | 1.1.4 |
Install
Binary package:
pkg install prodigy-lig
From the ports tree:
cd /usr/ports/biology/prodigy-lig/ && make install clean
To depend on this port in another port's Makefile:
RUN_DEPENDS= prodigy-lig>0:biology/prodigy-lig
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.1.4 | 1.1.4 | - | 1.1.3 | 1.1.4 |
| FreeBSD:14:quarterly | 1.1.4 | 1.1.4 | n/a | 1.1.3 | 1.1.4 |
| FreeBSD:15:latest | 1.1.4 | 1.1.4 | n/a | 1.1.3 | 1.1.3 |
| FreeBSD:15:quarterly | 1.1.4 | 1.1.4 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.1.4 | 1.1.4 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 3
${PYTHON_PKGNAMEPREFIX}numpy>=2.0: math/py-numpy${PYTHON_PKGNAMEPREFIX}biopython>=1.79: biology/py-biopython${PYTHON_PKGNAMEPREFIX}poetry-core>0: devel/py-poetry-core
Runtime 1
${PYTHON_PKGNAMEPREFIX}biopython>0: biology/py-biopython
Test 3
${PYTHON_PKGNAMEPREFIX}coverage>0: devel/py-coverage${PYTHON_PKGNAMEPREFIX}hypothesis>=6.100.1: devel/py-hypothesis${PYTHON_PKGNAMEPREFIX}pytest-cov>0: devel/py-pytest-cov
The full lists below include those, and their dependencies in turn.
Build dependencies 72
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- biology/py-biopython
- converters/fribidi
- converters/libiconv
- devel/binutils
- devel/gettext-runtime
- devel/glib20
- devel/gmake
- devel/libffi
- devel/libinotify
- devel/pcre2
- devel/py-build
- devel/py-installer
- devel/py-olefile
- devel/py-packaging
- devel/py-poetry-core
- devel/py-pyproject-hooks
- devel/readline
- graphics/gdk-pixbuf2
- graphics/giflib
- graphics/graphite2
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/libavif
- graphics/libimagequant
- graphics/libyuv
- graphics/openjpeg
- graphics/png
- graphics/py-pillow
- graphics/tiff
- graphics/webp
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-numpy
- misc/shared-mime-info
- multimedia/aom
- multimedia/dav1d
- multimedia/vmaf
- print/adobe-cmaps
- print/freetype2
- print/harfbuzz
- print/indexinfo
- print/libraqm
- print/py-reportlab
- textproc/expat2
- textproc/libxml2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-toolkits/py-tkinter
- x11-toolkits/tk86
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/xorgproto
Run dependencies 67
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- biology/py-biopython
- converters/fribidi
- converters/libiconv
- devel/binutils
- devel/gettext-runtime
- devel/glib20
- devel/libffi
- devel/libinotify
- devel/pcre2
- devel/py-olefile
- devel/py-packaging
- devel/readline
- graphics/gdk-pixbuf2
- graphics/giflib
- graphics/graphite2
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/libavif
- graphics/libimagequant
- graphics/libyuv
- graphics/openjpeg
- graphics/png
- graphics/py-pillow
- graphics/tiff
- graphics/webp
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-numpy
- misc/shared-mime-info
- multimedia/aom
- multimedia/dav1d
- multimedia/vmaf
- print/adobe-cmaps
- print/freetype2
- print/harfbuzz
- print/indexinfo
- print/libraqm
- print/py-reportlab
- textproc/expat2
- textproc/libxml2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-toolkits/py-tkinter
- x11-toolkits/tk86
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/xorgproto
No port depends on this one.
Configuration
No options to configure.
- USES
- gmake python
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| haddocking-prodigy-lig-v1.1.4_GH0.tar.gz | 176175 | 95b64a964d7f95a48689f9edba22b5265f4c3b447516c3810445b32534e9bc31 |