biology/py-biopython 1.85_4 FreeBSD
Collection of Python modules for bioinformatics
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- BSD3CLAUSE
- Categories
- biology, python
- Package size
- 3154.0 KiB, 24549.8 KiB installed
Description
The Biopython Project is an international association of developers who are providing freely available Python tools for use in areas of computational molecular biology such as bioinformatics and genomics.
Biopython is a collection of Python packages and modules created by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language.
Note that the current release is alpha quality, and not yet deemed to be stable.
This port includes optional support for Biopython-CORBA, a CORBA interface built to the BioCorba standard (http://biocorba.org/).
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/py-biopython | 1.85_4 |
| OpenBSD | biology/py-biopython | 1.88 |
| NetBSD | biology/py-biopython | 1.87 |
| DragonFly | biology/py-biopython | 1.85_1 |
Install
Binary package:
pkg install py312-biopythonFrom the ports tree:
cd /usr/ports/biology/py-biopython/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-biopython>0:biology/py-biopythonPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.85_4 | 1.85_4 | - | 1.85_1 | 1.85_4 |
| FreeBSD:14:quarterly | 1.85_4 | 1.85_4 | n/a | 1.85_1 | 1.85_4 |
| FreeBSD:15:latest | 1.85_4 | 1.85_4 | n/a | 1.85_1 | 1.85_1 |
| FreeBSD:15:quarterly | 1.85_4 | 1.85_4 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.85_4 | 1.85_4 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 1
${PYTHON_PKGNAMEPREFIX}numpy>=1.16: math/py-numpy
Runtime 1
${PYTHON_PKGNAMEPREFIX}numpy>=1.16: math/py-numpy
The full lists below include those, and their dependencies in turn.
Build dependencies 18
Run dependencies 66
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- converters/fribidi
- converters/libiconv
- devel/binutils
- devel/gettext-runtime
- devel/glib20
- devel/libffi
- devel/libinotify
- devel/pcre2
- devel/py-olefile
- devel/py-packaging
- devel/readline
- graphics/gdk-pixbuf2
- graphics/giflib
- graphics/graphite2
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/libavif
- graphics/libimagequant
- graphics/libyuv
- graphics/openjpeg
- graphics/png
- graphics/py-pillow
- graphics/tiff
- graphics/webp
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-numpy
- misc/shared-mime-info
- multimedia/aom
- multimedia/dav1d
- multimedia/vmaf
- print/adobe-cmaps
- print/freetype2
- print/harfbuzz
- print/indexinfo
- print/libraqm
- print/py-reportlab
- textproc/expat2
- textproc/libxml2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-toolkits/py-tkinter
- x11-toolkits/tk86
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/xorgproto
Configuration
Options name: biology_biopython
| Option | Default | Description |
|---|---|---|
| REPORTLAB | on | PDF support in Bio.Graphics module |
- USES
- python
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| biopython-1.85.tar.gz | 1.9909902e+07 | 5dafab74059de4e78f49f6b5684eddae6e7ce46f09cfa059c1d1339e8b1ea0a6 |
Master sites 1
- http://www.biopython.org/DIST/
Commit history 0
No commits in the history this site was built from.