BSD Portsbiology/py-dna-features-viewer 3.1.5 FreeBSD
Python library to visualize DNA features, e.g. GenBank or Gff files
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- MIT
- Categories
- biology, python
- Package size
- 55.3 KiB, 274.2 KiB installed
Description
DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files.
DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.
In the other systems
The newest version among them is 3.1.5, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| FreeBSD | biology/py-dna-features-viewer | 3.1.5 newest | none known | - | [email protected] | 2026-10-08 |
| NetBSD | biology/py-dna-features-viewer | 3.1.5 newest | none known | - | [email protected] | 2026-10-16 |
| DragonFly | biology/py-dna-features-viewer | 3.1.3_1 behind since 2026-08-27 | none known | - | [email protected] | - |
| HardenedBSD | biology/py-dna-features-viewer | 3.1.5 newest | no data | - | [email protected] | - |
| GhostBSD | biology/py-dna-features-viewer | 3.1.5 newest | no data | - | [email protected] | - |
Version history 1
Upstream's version as each commit to the port's Makefile set it, or as this site first saw it in the system's packages; the tree's own revisions are not versions here.
Install
Binary package:
pkg install py312-dna-features-viewerFrom the ports tree:
cd /usr/ports/biology/py-dna-features-viewer/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-dna-features-viewer>0:biology/py-dna-features-viewerPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 3.1.5 | 3.1.5 | - | 3.1.3_1 | 3.1.5 |
| FreeBSD:14:quarterly | 3.1.5 | 3.1.5 | n/a | 3.1.3_1 | 3.1.5 |
| FreeBSD:15:latest | 3.1.5 | 3.1.5 | n/a | 3.1.3_1 | 3.1.3_1 |
| FreeBSD:15:quarterly | 3.1.5 | 3.1.5 | n/a | n/a | n/a |
| FreeBSD:16:latest | 3.1.5 | 3.1.5 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
As this port's Makefile names them.
Build 1
${PYTHON_PKGNAMEPREFIX}wheel>0: devel/py-wheel
Runtime 4
${PYTHON_PKGNAMEPREFIX}matplotlib>=3: math/py-matplotlib${PYTHON_PKGNAMEPREFIX}biopython>0: biology/py-biopython${PYTHON_PKGNAMEPREFIX}bcbio-gff>0: biology/py-bcbio-gff${PYTHON_PKGNAMEPREFIX}packaging>0: devel/py-packaging
The full lists below include those, and their dependencies in turn.
Build dependencies 16
Run dependencies 85
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/py-brotli
- archivers/py-zopfli
- archivers/zopfli
- archivers/zstd
- biology/py-bcbio-gff
- biology/py-biopython
- converters/fribidi
- converters/libiconv
- devel/binutils
- devel/gettext-runtime
- devel/glib20
- devel/libffi
- devel/libinotify
- devel/pcre2
- devel/py-cycler
- devel/py-lxml
- devel/py-olefile
- devel/py-packaging
- devel/py-pyparsing
- devel/py-python-dateutil
- devel/py-six
- devel/py-unicodedata2
- devel/readline
- graphics/gdk-pixbuf2
- graphics/giflib
- graphics/graphite2
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/libavif
- graphics/libimagequant
- graphics/libyuv
- graphics/openjpeg
- graphics/png
- graphics/py-pillow
- graphics/tiff
- graphics/webp
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-contourpy
- math/py-kiwisolver
- math/py-matplotlib
- math/py-numpy
- math/qhull
- misc/shared-mime-info
- multimedia/aom
- multimedia/dav1d
- multimedia/vmaf
- print/adobe-cmaps
- print/freetype2
- print/harfbuzz
- print/indexinfo
- print/libraqm
- print/py-fonttools
- print/py-reportlab
- security/libgcrypt
- security/libgpg-error
- textproc/expat2
- textproc/libxml2
- textproc/libxslt
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-toolkits/py-tkinter
- x11-toolkits/tk86
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/xorgproto
No port depends on this one.
Configuration
No options to configure.
- USES
- python
- Service scripts
- none
Message after installing
===> NOTICE: The py312-dna-features-viewer port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| dna_features_viewer-3.1.5.tar.gz | 30600 | 4740b018f7c45427054cb1403ff8b11209bcbe4ca9d5b77f28f14ed5ecb144c4 |
Master sites 1
- PYPI