BSD Portsbiology/py-bcbio-gff 0.7.1_1 FreeBSD
Read and write Generic Feature Format (GFF) with Biopython integration
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- BSD3CLAUSE
- Categories
- biology, python
- Package size
- 37.4 KiB, 164.4 KiB installed
Description
Read and write Generic Feature Format (GFF) with Biopython integration.
Generic Feature Format (GFF) is a biological sequence file format for representing features and annotations on sequences. It is a tab delimited format, making it accessible to biologists and editable in text editors and spreadsheet programs. It is also well defined and can be parsed via automated programs. GFF files are available from many of the large sequencing and annotation centers.
In the other systems
The newest version among them is 0.7.1, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| FreeBSD | biology/py-bcbio-gff | 0.7.1_1 newest | none known | - | [email protected] | 2026-10-08 |
| NetBSD | biology/py-bcbio-gff | 0.7.1 newest | none known | - | [email protected] | - |
| DragonFly | biology/py-bcbio-gff | 0.7.1_1 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/py-bcbio-gff | 0.7.1_1 newest | no data | - | [email protected] | - |
| GhostBSD | biology/py-bcbio-gff | 0.7.1_1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install py312-bcbio-gffFrom the ports tree:
cd /usr/ports/biology/py-bcbio-gff/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-bcbio-gff>0:biology/py-bcbio-gffPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.7.1_1 | 0.7.1_1 | 0.6.9 | 0.7.1_1 | 0.7.1_1 |
| FreeBSD:14:quarterly | 0.7.1_1 | 0.7.1_1 | n/a | 0.7.1_1 | 0.7.1_1 |
| FreeBSD:15:latest | 0.7.1_1 | 0.7.1_1 | n/a | 0.7.1_1 | 0.7.1_1 |
| FreeBSD:15:quarterly | 0.7.1_1 | 0.7.1_1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.7.1_1 | 0.7.1_1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 11
Run dependencies 7
Required by 1
Configuration
No options to configure.
- USES
- python
- Service scripts
- none
Message after installing
===> NOTICE: The py312-bcbio-gff port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| bcbio-gff-0.7.1.tar.gz | 20102 | d1dc3294147b95baced6033f6386a0fed45c43767ef02d1223df5ef497e9cca6 |
Master sites 1
- PYPI