biology/py-dnaio 1.2.4 FreeBSD

Read and write FASTQ and FASTA

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: MIT
Categories: biology, python
Package size: 96.9 KiB, 381.1 KiB installed

Description

dnaio is a Python 3 library for fast input and output of FASTQ and FASTA files. It supports paired-end data in separate files, interleaved paired-end in a single file and compression using gzip, bzip, and xz.

In the other systems

The newest version among them is 1.2.4, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

FreeBSD

biology/py-dnaio

1.2.4 newest

none known

[email protected]

NetBSD

biology/py-dnaio

1.2.0nb1

none known

[email protected]

2026-10-16

DragonFly

biology/py-dnaio

1.2.3

none known

[email protected]

HardenedBSD

biology/py-dnaio

1.2.4 newest

no data

[email protected]

GhostBSD

biology/py-dnaio

1.2.4 newest

no data

[email protected]

Compare across BSDs

Install

Binary package:

pkg install py312-dnaio

From the ports tree:

cd /usr/ports/biology/py-dnaio/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	py312-dnaio>0:biology/py-dnaio

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository	aarch64	amd64	armv6	armv7	i386
FreeBSD:14:latest	1.2.4	1.2.4	0.5.1	1.2.3	1.2.4
FreeBSD:14:quarterly	1.2.4	1.2.4	n/a	1.2.3	1.2.4
FreeBSD:15:latest	1.2.4	1.2.4	n/a	1.2.3	1.2.3
FreeBSD:15:quarterly	1.2.4	1.2.4	n/a	n/a	n/a
FreeBSD:16:latest	1.2.4	1.2.4	n/a	n/a	n/a
FreeBSD:16:quarterly	n/a	n/a	n/a	n/a	n/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/py-dnaio"]
  u0["biology/biostar-tools"] --> me
  u1["biology/py-cutadapt"] --> me
  me --> d0["devel/gettext-runtime"]
  me --> d1["devel/libffi"]
  me --> d2["devel/readline"]
  me --> d3["lang/python312"]
  me --> d4["math/mpdecimal"]
  me --> d5["print/indexinfo"]
  me --> d6["textproc/expat2"]
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

As this port's Makefile names them.

Build 2

${PYTHON_PKGNAMEPREFIX}setuptools-scm>0 : devel/py-setuptools-scm
${PYTHON_PKGNAMEPREFIX}wheel>=0 : devel/py-wheel

The full lists below include those, and their dependencies in turn.

Build dependencies 18

Run dependencies 7

Required by 2

Configuration

No options to configure.

USES: python
Service scripts: none

Files

distinfo 1

File

Size

SHA256

dnaio-1.2.4.tar.gz

60430

a7570311f29e8b3c1ea39a60f57b7baf8dad8f2508595c58d4278c5571463166

Master sites 1

PYPI

Commit history 0

No commits in the history this site was built from.