BSD Portsbiology/py-cutadapt 5.2 FreeBSD
Trim adapters from high-throughput sequencing reads
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- MIT
- Categories
- biology, python
- Package size
- 273.5 KiB, 1350.3 KiB installed
Description
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequences from your high-throughput sequencing reads.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/py-cutadapt | 5.2 |
| NetBSD | biology/py-cutadapt | 4.7nb1 |
| DragonFly | biology/py-cutadapt | 5.0_1 |
| HardenedBSD | biology/py-cutadapt | 5.2 |
| GhostBSD | biology/py-cutadapt | 5.2 |
Install
Binary package:
pkg install py312-cutadaptFrom the ports tree:
cd /usr/ports/biology/py-cutadapt/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-cutadapt>0:biology/py-cutadaptPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 5.2 | 5.2 | 3.3_1 | 5.1 | 5.2 |
| FreeBSD:14:quarterly | 5.2 | 5.2 | n/a | 5.1 | 5.2 |
| FreeBSD:15:latest | 5.2 | 5.2 | n/a | 5.1 | 5.1 |
| FreeBSD:15:quarterly | 5.2 | 5.2 | n/a | n/a | n/a |
| FreeBSD:16:latest | 5.2 | 5.2 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 1
${PYTHON_PKGNAMEPREFIX}setuptools-scm>0: devel/py-setuptools-scm
Runtime 2
${PYTHON_PKGNAMEPREFIX}xopen>=1.6.0: archivers/py-xopen${PYTHON_PKGNAMEPREFIX}dnaio>=1.2.0: biology/py-dnaio
Test 3
${PYTHON_PKGNAMEPREFIX}pytest>0: devel/py-pytest${PYTHON_PKGNAMEPREFIX}pytest-timeout>0: devel/py-pytest-timeout${PYTHON_PKGNAMEPREFIX}pytest-mock>0: devel/py-pytest-mock
The full lists below include those, and their dependencies in turn.
Build dependencies 14
Run dependencies 12
Required by 1
Configuration
No options to configure.
- USES
- python
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| cutadapt-5.2.tar.gz | 253642 | 2394deead42ecae5fe0fdf369e35f3e2afed770e14059582272779c2e8295d3c |
Master sites 1
- PYPI
Commit history 0
No commits in the history this site was built from.