BSD Portsbiology/py-gffutils 0.14 FreeBSD
Work with GFF and GTF files in a flexible database framework
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- MIT
- Categories
- biology, python
- Package size
- 1176.0 KiB, 10462.9 KiB installed
Description
gffutils is a Python package for working with and manipulating the GFF and GTF format files typically used for genomic annotations. Files are loaded into a sqlite3 database, allowing much more complex manipulation of hierarchical features (e.g., genes, transcripts, and exons) than is possible with plain-text methods alone.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/py-gffutils | 0.14 |
| DragonFly | biology/py-gffutils | 0.13_1 |
| HardenedBSD | biology/py-gffutils | 0.14 |
| GhostBSD | biology/py-gffutils | 0.14 |
Install
Binary package:
pkg install py312-gffutilsFrom the ports tree:
cd /usr/ports/biology/py-gffutils/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-gffutils>0:biology/py-gffutilsPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.14 | 0.14 | 0.11.0 | 0.13_1 | 0.14 |
| FreeBSD:14:quarterly | 0.14 | 0.14 | n/a | 0.13_1 | 0.14 |
| FreeBSD:15:latest | 0.14 | 0.14 | n/a | 0.13_1 | 0.13_1 |
| FreeBSD:15:quarterly | 0.14 | 0.14 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.14 | 0.14 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 1
${PYTHON_PKGNAMEPREFIX}wheel>0: devel/py-wheel
Runtime 5
${PYTHON_PKGNAMEPREFIX}argcomplete>=1.9.4: devel/py-argcomplete${PYTHON_PKGNAMEPREFIX}argh>=0.26.2: devel/py-argh${PYTHON_PKGNAMEPREFIX}pyfaidx>=0.5.5.2: biology/py-pyfaidx${PYTHON_PKGNAMEPREFIX}simplejson>0: devel/py-simplejson${PYTHON_PKGNAMEPREFIX}six>=1.12.0: devel/py-six
The full lists below include those, and their dependencies in turn.
Build dependencies 16
Run dependencies 16
No port depends on this one.
Configuration
No options to configure.
- USES
- python shebangfix
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| gffutils-0.14.tar.gz | 1.566441e+06 | 0246a16373453a5a1faf6696553557f2ebf49b2f91a7730cb59d46b5cbd1d9b1 |
Master sites 1
- PYPI
Commit history 0
No commits in the history this site was built from.