BSD Portsbiology/py-goatools 1.6.5 FreeBSD
Tools for processing and visualizing Gene Ontology terms
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- BSD2CLAUSE
- Categories
- biology, python
- Package size
- 34066.7 KiB, 298334.0 KiB installed
Description
Goatools is a python library for processing Gene Ontology (GO) terms. It includes routines for processing, filtering, and visualizing GO data.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/py-goatools | 1.6.5 |
| DragonFly | biology/py-goatools | 1.1.6_2 |
| HardenedBSD | biology/py-goatools | 1.6.5 |
| GhostBSD | biology/py-goatools | 1.6.5 |
Install
Binary package:
pkg install py312-goatoolsFrom the ports tree:
cd /usr/ports/biology/py-goatools/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-goatools>0:biology/py-goatoolsPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.6.5 | 1.6.5 | - | 1.1.6_2 | 1.6.5 |
| FreeBSD:14:quarterly | 1.6.5 | 1.6.5 | n/a | 1.1.6_2 | 1.6.5 |
| FreeBSD:15:latest | 1.6.5 | 1.6.5 | n/a | 1.1.6_2 | 1.1.6_2 |
| FreeBSD:15:quarterly | 1.6.5 | 1.6.5 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.6.5 | 1.6.5 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 3
${PYTHON_PKGNAMEPREFIX}setuptools-scm>=6.0: devel/py-setuptools-scm${PYTHON_PKGNAMEPREFIX}setuptools_scm_git_archive>0: devel/py-setuptools_scm_git_archive${PYTHON_PKGNAMEPREFIX}wheel>0: devel/py-wheel
Runtime 11
${PYTHON_PKGNAMEPREFIX}ftpretty>0: ftp/py-ftpretty${PYTHON_PKGNAMEPREFIX}openpyxl>0: textproc/py-openpyxl${PYTHON_PKGNAMEPREFIX}pandas>0: math/py-pandas${PYTHON_PKGNAMEPREFIX}pydot>0: graphics/py-pydot${PYTHON_PKGNAMEPREFIX}requests>0: www/py-requests${PYTHON_PKGNAMEPREFIX}rich>=0: textproc/py-rich${PYTHON_PKGNAMEPREFIX}scipy>0: science/py-scipy${PYTHON_PKGNAMEPREFIX}statsmodels>=0.13.0: math/py-statsmodels${PYTHON_PKGNAMEPREFIX}statsmodels>0: math/py-statsmodels${PYTHON_PKGNAMEPREFIX}xlsxwriter>0: textproc/py-xlsxwriterwget>0: ftp/wget
The full lists below include those, and their dependencies in turn.
Build dependencies 18
- archivers/liblz4
- archivers/zstd
- devel/gettext-runtime
- devel/libffi
- devel/py-build
- devel/py-installer
- devel/py-packaging
- devel/py-pyproject-hooks
- devel/py-setuptools
- devel/py-setuptools-scm
- devel/py-setuptools_scm_git_archive
- devel/py-wheel
- devel/readline
- lang/python312
- lang/python315
- math/mpdecimal
- print/indexinfo
- textproc/expat2
Run dependencies 99
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/py-sqlite3
- databases/sqlite3
- devel/binutils
- devel/gettext-runtime
- devel/glib20
- devel/libdatrie
- devel/libedit
- devel/libffi
- devel/libinotify
- devel/libltdl
- devel/libthai
- devel/libunistring
- devel/pcre2
- devel/py-interface-meta
- devel/py-packaging
- devel/py-pyparsing
- devel/py-python-dateutil
- devel/py-pytz
- devel/py-six
- devel/py-typing-extensions
- devel/py-tzdata
- devel/py-wrapt
- devel/readline
- dns/libidn2
- dns/py-idna
- ftp/py-ftpretty
- ftp/wget
- graphics/cairo
- graphics/gd
- graphics/giflib
- graphics/graphite2
- graphics/graphviz
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lerc
- graphics/png
- graphics/py-pydot
- graphics/tiff
- graphics/webp
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/gmp
- math/libtommath
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-bottleneck
- math/py-formulaic
- math/py-narwhals
- math/py-numexpr
- math/py-numpy
- math/py-pandas
- math/py-patsy
- math/py-statsmodels
- math/qhull
- net/py-pysocks
- net/py-urllib3
- print/freetype2
- print/harfbuzz
- print/indexinfo
- science/py-scipy
- security/py-certifi
- textproc/expat2
- textproc/py-charset-normalizer
- textproc/py-et_xmlfile
- textproc/py-markdown-it-py
- textproc/py-mdurl
- textproc/py-openpyxl
- textproc/py-pygments
- textproc/py-rich
- textproc/py-xlsxwriter
- www/py-requests
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-toolkits/libXaw
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/pango
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXpm
- x11/libXrender
- x11/libxcb
- x11/pixman
- x11/xorgproto
Required by 1
Configuration
No options to configure.
- USES
- python
- Service scripts
- none
Message after installing
===> NOTICE: The py312-goatools port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| goatools-1.6.5.tar.gz | 1.7760712e+07 | 0d799706dc3ae4480feda25f411f8e9b2741c0d8ea7ad73af0b05730198a4be1 |
Master sites 1
- PYPI