BSD Portsbiology/rampler 2.1.1 FreeBSD
Standalone module for sampling genomic sequences
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
b9b9ae0ddb- License
- MIT
- Categories
- biology
- Package size
- 17.8 KiB, 39.3 KiB installed
Description
Rampler is a standalone module for sampling genomic sequences. It supports two modes, random subsampling of sequencing data to a desired depth (given the reference length) and file splitting to desired size in bytes.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/rampler | 2.1.1 |
| DragonFly | biology/rampler | 2.0.0_1 |
Install
Binary package:
pkg install ramplerFrom the ports tree:
cd /usr/ports/biology/rampler/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= rampler>0:biology/ramplerPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.1.1 | 2.1.1 | - | 2.0.0_1 | 2.1.1 |
| FreeBSD:14:quarterly | 2.1.1 | 2.1.1 | n/a | 2.0.0_1 | 2.1.1 |
| FreeBSD:15:latest | 2.1.1 | 2.1.1 | n/a | 2.0.0_1 | 2.0.0_1 |
| FreeBSD:15:quarterly | 2.1.1 | 2.1.1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.1.1 | 2.1.1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 2
bioparser>0: biology/bioparser${LOCALBASE}/include/biosoup/nucleic_acid.hpp: biology/biosoup
The full lists below include those, and their dependencies in turn.
Build dependencies 17
No port depends on this one.
Configuration
No options to configure.
- USES
- cmake compiler:c++11-lang localbase
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| rvaser-rampler-2.1.1_GH0.tar.gz | 5365 | 9f6bd2a461e87a1f6eaa9bfd8a287da187718af5f892d05fd4cf6dd13c33fd45 |