BSD Portsbiology/sam2pairwise 1.0.0 FreeBSD
Show pairwise alignment for each read in a SAM file
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- MIT
- Categories
- biology
- Package size
- 15.0 KiB, 42.0 KiB installed
Description
sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/sam2pairwise | 1.0.0 |
| DragonFly | biology/sam2pairwise | 1.0.0 |
Install
Binary package:
pkg install sam2pairwiseFrom the ports tree:
cd /usr/ports/biology/sam2pairwise/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= sam2pairwise>0:biology/sam2pairwisePackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 |
| FreeBSD:14:quarterly | 1.0.0 | 1.0.0 | n/a | 1.0.0 | 1.0.0 |
| FreeBSD:15:latest | 1.0.0 | 1.0.0 | n/a | 1.0.0 | 1.0.0 |
| FreeBSD:15:quarterly | 1.0.0 | 1.0.0 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.0.0 | 1.0.0 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Required by 1
Configuration
No options to configure.
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| mlafave-sam2pairwise-v1.0.0_GH0.tar.gz | 10013 | 899d3db071cc248870bbedbdb39784de4c54c9a7888bc408022e809ace47ec0e |