BSD Ports

biology/sam2pairwise 1.0.0 DragonFly

Show pairwise alignment for each read in a SAM file

System
DragonFly
Repository
DPorts
Maintainer
[email protected] (as in FreeBSD)
License
MIT
Categories
biology
Package size
22.0 KiB, 63.3 KiB installed

Description

sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.

In the other systems

SystemPortVersion
DragonFlybiology/sam2pairwise1.0.0
FreeBSDbiology/sam2pairwise1.0.0
HardenedBSDbiology/sam2pairwise1.0.0
GhostBSDbiology/sam2pairwise1.0.0

Install

Binary package:

pkg install sam2pairwise

From DPorts:

cd /usr/dports/biology/sam2pairwise && make install clean

Dependencies

No port depends on this one.