BSD Ports

biology/scrm 1.7.4_1 FreeBSD

Coalescent simulator for biological sequences

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
License
GPLv3
Categories
biology
Package size
79.2 KiB, 198.5 KiB installed

Description

scrm simulates the evolution of genetic sequences. It takes a neutral evolutionary model as input, and generates random sequences that evolved under the model. As coalescent simulator, it traces the ancestry of the sampled sequences backwards in time and is therefore extremely efficient. Compared to other coalescent simulators, it can simulate chromosome-scale sequences without a measureable reduction of genetic linkage between different sites.

In the other systems

SystemPortVersion
FreeBSDbiology/scrm1.7.4_1
DragonFlybiology/scrm1.7.4_1
HardenedBSDbiology/scrm1.7.4_1
GhostBSDbiology/scrm1.7.4_1

Install

Binary package:

pkg install scrm

From the ports tree:

cd /usr/ports/biology/scrm/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	scrm>0:biology/scrm

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest1.7.4_11.7.4_11.7.41.7.4_11.7.4_1
FreeBSD:14:quarterly1.7.4_11.7.4_1n/a1.7.4_11.7.4_1
FreeBSD:15:latest1.7.4_11.7.4_1n/a1.7.4_11.7.4_1
FreeBSD:15:quarterly1.7.4_11.7.4_1n/an/an/a
FreeBSD:16:latest1.7.4_11.7.4_1n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 8

No port depends on this one.

Configuration

No options to configure.

USES
autoreconf compiler:c++11-lang gmake
Service scripts
none

Files

distinfo 1
FileSizeSHA256
scrm-scrm-v1.7.4_GH0.tar.gz34161213f4b0febabcdf6a2b478693febd2fb9d3f47532fb39ffaa4f01fe816f69ceb7

Commit history 0

No commits in the history this site was built from.