biology/seqan 2.4.0 FreeBSD

C++ sequence analysis template library

System: FreeBSD
Repository: FreeBSD ports
Maintainer: h2+[email protected]
License: BSD3CLAUSE
Categories: biology
Package size: 4850.3 KiB, 35917.3 KiB installed

Description

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. The library is licensed under the 3-clause BSD license except the applications which are GPL.

This port only contains the header library and API documentation. The apps are installed by biology/seqan-apps.

In the other systems

System

Port

Version

FreeBSD

biology/seqan

2.4.0

DragonFly

biology/seqan

2.4.0

Install

Binary package:

pkg install seqan

From the ports tree:

cd /usr/ports/biology/seqan/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	seqan>0:biology/seqan

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository	aarch64	amd64	armv6	armv7	i386
FreeBSD:14:latest	2.4.0	2.4.0	2.4.0	2.4.0	2.4.0
FreeBSD:14:quarterly	2.4.0	2.4.0	n/a	2.4.0	2.4.0
FreeBSD:15:latest	2.4.0	2.4.0	n/a	2.4.0	2.4.0
FreeBSD:15:quarterly	2.4.0	2.4.0	n/a	n/a	n/a
FreeBSD:16:latest	2.4.0	2.4.0	n/a	n/a	n/a
FreeBSD:16:quarterly	n/a	n/a	n/a	n/a	n/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

No port depends on this one.

Configuration

Options name: biology_seqan

Option

Default

Description

DOCS

off

Build and/or install documentation

USES: tar:xz
Service scripts: none
Conflicts with: seqan1

Files

pkg-plist 731

include/seqan/align.h
include/seqan/align/align_base.h
include/seqan/align/align_cols.h
include/seqan/align/align_config.h
include/seqan/align/align_interface_wrapper.h
include/seqan/align/align_iterator_base.h
include/seqan/align/align_metafunctions.h
include/seqan/align/align_traceback.h
include/seqan/align/aligned_sequence_concept.h
include/seqan/align/alignment_algorithm_tags.h
include/seqan/align/alignment_operations.h
include/seqan/align/dp_algorithm_impl.h
include/seqan/align/dp_align_simd_helper.h
include/seqan/align/dp_band.h
include/seqan/align/dp_cell.h
include/seqan/align/dp_cell_affine.h
include/seqan/align/dp_cell_dynamic.h
include/seqan/align/dp_cell_linear.h
include/seqan/align/dp_context.h
include/seqan/align/dp_formula.h
include/seqan/align/dp_formula_affine.h
include/seqan/align/dp_formula_dynamic.h
include/seqan/align/dp_formula_linear.h
include/seqan/align/dp_matrix.h
include/seqan/align/dp_matrix_navigator.h
include/seqan/align/dp_matrix_navigator_score_matrix.h
include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
include/seqan/align/dp_matrix_navigator_trace_matrix.h
include/seqan/align/dp_matrix_sparse.h
include/seqan/align/dp_meta_info.h
include/seqan/align/dp_profile.h
include/seqan/align/dp_scout.h
include/seqan/align/dp_scout_simd.h
include/seqan/align/dp_setup.h
include/seqan/align/dp_trace_segment.h
include/seqan/align/dp_traceback_adaptor.h
include/seqan/align/dp_traceback_impl.h
include/seqan/align/evaluate_alignment.h
include/seqan/align/fragment.h
include/seqan/align/gap_anchor.h
include/seqan/align/gapped_value_type.h
include/seqan/align/gaps_anchor.h
include/seqan/align/gaps_array.h
include/seqan/align/gaps_base.h
include/seqan/align/gaps_iterator_anchor.h
include/seqan/align/gaps_iterator_array.h
include/seqan/align/gaps_iterator_base.h
include/seqan/align/global_alignment_banded.h
include/seqan/align/global_alignment_hirschberg_impl.h
include/seqan/align/global_alignment_myers_hirschberg_impl.h
include/seqan/align/global_alignment_myers_impl.h
include/seqan/align/global_alignment_specialized.h
include/seqan/align/global_alignment_unbanded.h
include/seqan/align/local_alignment_banded.h
include/seqan/align/local_alignment_banded_waterman_eggert_impl.h
include/seqan/align/local_alignment_enumeration.h
include/seqan/align/local_alignment_enumeration_banded.h
include/seqan/align/local_alignment_enumeration_unbanded.h
include/seqan/align/local_alignment_unbanded.h
include/seqan/align/local_alignment_waterman_eggert_impl.h
include/seqan/align/matrix_base.h
include/seqan/align_extend.h
include/seqan/align_extend/align_extend.h
include/seqan/align_extend/align_extend_base.h
include/seqan/align_extend/dp_scout_xdrop.h
include/seqan/align_parallel.h
include/seqan/align_parallel/async_wave_execution_interface.h
include/seqan/align_parallel/dp_kernel_adaptor.h
include/seqan/align_parallel/dp_parallel_execution_policies.h
include/seqan/align_parallel/dp_parallel_scout.h
include/seqan/align_parallel/dp_parallel_scout_simd.h
include/seqan/align_parallel/dp_settings.h
include/seqan/align_parallel/dp_traits.h
include/seqan/align_parallel/parallel_align_interface.h
include/seqan/align_parallel/wavefront_alignment_executor.h
include/seqan/align_parallel/wavefront_alignment_result.h
include/seqan/align_parallel/wavefront_alignment_scheduler.h
include/seqan/align_parallel/wavefront_alignment_task.h
include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h
include/seqan/align_parallel/wavefront_task.h
include/seqan/align_parallel/wavefront_task_event.h
include/seqan/align_parallel/wavefront_task_executor.h
include/seqan/align_parallel/wavefront_task_queue.h
include/seqan/align_parallel/wavefront_task_scheduler.h
include/seqan/align_parallel/wavefront_task_util.h
include/seqan/align_profile.h
include/seqan/align_profile/add_to_profile.h
include/seqan/align_profile/score_profile_seq.h
include/seqan/align_split.h
include/seqan/align_split/align_split_interface.h
include/seqan/align_split/dp_scout_split.h
include/seqan/alignment_free.h
include/seqan/alignment_free/af_d2.h
include/seqan/alignment_free/af_d2star.h
include/seqan/alignment_free/af_d2z.h
include/seqan/alignment_free/af_n2.h
include/seqan/alignment_free/alignment_free_base.h
include/seqan/alignment_free/alignment_free_comparison.h
include/seqan/alignment_free/kmer_functions.h
include/seqan/arg_parse.h

The first 100 are listed.

distinfo 1

File

Size

SHA256

seqan-library-2.4.0.tar.xz

4.868868e+06

dd97b1514ab83acb7d7be911b157979e188e8ca72cc61c430c1e0fd03bcd41a5

Master sites 1

http://packages.seqan.de/seqan-library/

Commit history 0

No commits in the history this site was built from.