biology/seqan1 1.3.1_4 FreeBSD

C++ Sequence Analysis Library

System: FreeBSD
Repository: FreeBSD ports
Maintainer: h2+[email protected]
License: BSD3CLAUSE
Categories: biology
Package size: 1359.8 KiB, 16730.0 KiB installed

Description

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

This port includes only the library, the apps have been moved to biology/seqan-apps. This is the last release of the version 1 API, it is highly recommended to upgrade to biology/seqan (version 2).

In the other systems

System

Port

Version

FreeBSD

biology/seqan1

1.3.1_4

DragonFly

biology/seqan1

1.3.1_4

Install

Binary package:

pkg install seqan1

From the ports tree:

cd /usr/ports/biology/seqan1/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	seqan1>0:biology/seqan1

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

1.3.1_4

FreeBSD:14:quarterly

1.3.1_4

n/a

1.3.1_4

FreeBSD:15:latest

1.3.1_4

n/a

1.3.1_4

FreeBSD:15:quarterly

1.3.1_4

n/a

FreeBSD:16:latest

1.3.1_4

n/a

FreeBSD:16:quarterly

n/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

No port depends on this one.

Configuration

Options name: biology_seqan

Option

Default

Description

DOCS

off

Build and/or install documentation

USES: zip
Service scripts: none
Conflicts with: seqan

Files

pkg-plist 1983

include/seqan.h
include/seqan/LICENSE
include/seqan/align.h
include/seqan/align/align_algorithms.h
include/seqan/align/align_base.h
include/seqan/align/align_cols_base.h
include/seqan/align/align_dynprog.h
include/seqan/align/align_generated_forwards.h
include/seqan/align/align_hirschberg.h
include/seqan/align/align_iterator_base.h
include/seqan/align/align_local_dynprog.h
include/seqan/align/align_local_dynprog_banded.h
include/seqan/align/align_myers.h
include/seqan/align/align_trace.h
include/seqan/align/gaps_array.h
include/seqan/align/gaps_base.h
include/seqan/align/gaps_iterator_base.h
include/seqan/align/gaps_sumlist.h
include/seqan/align/hirschberg_set.h
include/seqan/align/matrix_base.h
include/seqan/basic.h
include/seqan/basic/basic_aggregates.h
include/seqan/basic/basic_allocator_chunkpool.h
include/seqan/basic/basic_allocator_interface.h
include/seqan/basic/basic_allocator_multipool.h
include/seqan/basic/basic_allocator_simple.h
include/seqan/basic/basic_allocator_singlepool.h
include/seqan/basic/basic_allocator_to_std.h
include/seqan/basic/basic_alphabet_interface.h
include/seqan/basic/basic_alphabet_interface2.h
include/seqan/basic/basic_alphabet_simple.h
include/seqan/basic/basic_alphabet_simple_tabs.h
include/seqan/basic/basic_alphabet_trait_basic.h
include/seqan/basic/basic_compare.h
include/seqan/basic/basic_converter.h
include/seqan/basic/basic_counted_ptr.h
include/seqan/basic/basic_debug.h
include/seqan/basic/basic_definition.h
include/seqan/basic/basic_forwards.h
include/seqan/basic/basic_generated_forwards.h
include/seqan/basic/basic_holder.h
include/seqan/basic/basic_holder_dynamic.h
include/seqan/basic/basic_host.h
include/seqan/basic/basic_iterator.h
include/seqan/basic/basic_iterator_adapt_std.h
include/seqan/basic/basic_iterator_adaptor.h
include/seqan/basic/basic_iterator_base.h
include/seqan/basic/basic_iterator_position.h
include/seqan/basic/basic_iterator_simple.h
include/seqan/basic/basic_logvalue.h
include/seqan/basic/basic_metaprogramming.h
include/seqan/basic/basic_operator.h
include/seqan/basic/basic_parallelism.h
include/seqan/basic/basic_pointer.h
include/seqan/basic/basic_profchar.h
include/seqan/basic/basic_profile.h
include/seqan/basic/basic_proxy.h
include/seqan/basic/basic_sse2.h
include/seqan/basic/basic_tag.h
include/seqan/basic/basic_testing.h
include/seqan/basic/basic_transport.h
include/seqan/basic/basic_type.h
include/seqan/basic/basic_volatile_ptr.h
include/seqan/blast.h
include/seqan/blast/blast_base.h
include/seqan/blast/blast_generated_forwards.h
include/seqan/blast/blast_hit.h
include/seqan/blast/blast_hit_iterator.h
include/seqan/blast/blast_hsp.h
include/seqan/blast/blast_hsp_iterator.h
include/seqan/blast/blast_iterator.h
include/seqan/blast/blast_parsing.h
include/seqan/blast/blast_report.h
include/seqan/blast/blast_run.h
include/seqan/blast/blast_stream_hit.h
include/seqan/blast/blast_stream_hit_iterator.h
include/seqan/blast/blast_stream_hsp_iterator.h
include/seqan/blast/blast_stream_report.h
include/seqan/chaining.h
include/seqan/chaining/chain_base.h
include/seqan/chaining/chain_generic.h
include/seqan/chaining/chain_meta_fragment.h
include/seqan/chaining/chain_point.h
include/seqan/chaining/chain_wrapper_point.h
include/seqan/chaining/chaining_generated_forwards.h
include/seqan/chaining/fragment.h
include/seqan/chaining/geom_distribution.h
include/seqan/chaining/range_max_tree.h
include/seqan/chaining/range_tree.h
include/seqan/chaining/rmt_base.h
include/seqan/chaining/rmt_common_algos.h
include/seqan/chaining/rmt_compl_algos.h
include/seqan/chaining/rmt_def_algos.h
include/seqan/chaining/rmt_skip_base_element.h
include/seqan/chaining/rmt_skip_element.h
include/seqan/chaining/rt_base.h
include/seqan/chaining/rt_common_algos.h
include/seqan/chaining/rt_impl.h
include/seqan/chaining/rt_skip_base_element.h
include/seqan/chaining/rt_skip_element.h

The first 100 are listed.

distinfo 1

File

Size

SHA256

seqan-1.3.1.zip

8.787521e+06

87eebe73ace9ada2f4664a768ae212d4acc5fb3ce87702709c3d15bf2d153aeb

Master sites 1

http://ftp.seqan.de/releases/

Commit history 0

No commits in the history this site was built from.