BSD Portsbiology/seqtk 1.5 FreeBSD
Tool for processing sequences in FASTA/FASTQ format
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- GPLv2
- Categories
- biology
- Package size
- 37.5 KiB, 82.2 KiB installed
Description
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. It performs basic file conversions and edits much like standard Unix tools do with text files.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/seqtk | 1.5 |
| NetBSD | biology/seqtk | 1.4 |
| DragonFly | biology/seqtk | 1.4 |
Install
Binary package:
pkg install seqtkFrom the ports tree:
cd /usr/ports/biology/seqtk/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= seqtk>0:biology/seqtkPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.5 | 1.5 | 1.3 | 1.5 | 1.5 |
| FreeBSD:14:quarterly | 1.5 | 1.5 | n/a | 1.5 | 1.5 |
| FreeBSD:15:latest | 1.5 | 1.5 | n/a | 1.5 | 1.5 |
| FreeBSD:15:quarterly | 1.5 | 1.5 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.5 | 1.5 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Required by 1
Configuration
No options to configure.
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| lh3-seqtk-v1.5_GH0.tar.gz | 24050 | 384aa1e3cecf4f70403839d586cbb29d469b7c6f773a64bc5af48a6e4b8220a6 |