BSD Portsdevel/R-cran-msm 1.8.2 FreeBSD
Multi-State Markov and Hidden Markov Models in Continuous Time
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- GPLv2+
- Categories
- devel
- Package size
- 1513.8 KiB, 1927.3 KiB installed
Description
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal data. Designed for processes observed at arbitrary times in continuous time (panel data) but some other observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time.
See also: https://github.com/chjackson/msm
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | devel/R-cran-msm | 1.8.2 |
| DragonFly | devel/R-cran-msm | 1.8.2 |
| MidnightBSD | devel/R-cran-msm | 1.8.2 |
| HardenedBSD | devel/R-cran-msm | 1.8.2 |
| GhostBSD | devel/R-cran-msm | 1.8.2 |
Install
Binary package:
pkg install R-cran-msmFrom the ports tree:
cd /usr/ports/devel/R-cran-msm/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= R-cran-msm>0:devel/R-cran-msmPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.8.2 | 1.8.2 | - | 1.8.2 | 1.8.2 |
| FreeBSD:14:quarterly | 1.8.2 | 1.8.2 | n/a | 1.8.2 | 1.8.2 |
| FreeBSD:15:latest | 1.8.2 | 1.8.2 | n/a | 1.8.2 | 1.8.2 |
| FreeBSD:15:quarterly | 1.8.2 | 1.8.2 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.8.2 | 1.8.2 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Runtime 4
R-cran-expm>0: math/R-cran-expmR-cran-tibble>0: devel/R-cran-tibbleR-cran-mvtnorm>0: math/R-cran-mvtnormR-cran-generics>0: devel/R-cran-generics
Test 1
R-cran-testthat>0: devel/R-cran-testthat
The full lists below include those, and their dependencies in turn.
Build dependencies 86
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- devel/binutils
- devel/cmake-core
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/glib20
- devel/gmake
- devel/icu
- devel/jsoncpp
- devel/libdaemon
- devel/libdatrie
- devel/libevent
- devel/libffi
- devel/libinotify
- devel/libthai
- devel/libunistring
- devel/libuv
- devel/pcre2
- devel/py-packaging
- devel/readline
- dns/libidn
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/graphite2
- graphics/jbig2dec
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/openjpeg
- graphics/png
- graphics/poppler-data
- graphics/tiff
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/R
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- net/avahi-app
- ports-mgmt/pkg
- print/cups
- print/freetype2
- print/ghostscript10
- print/harfbuzz
- print/indexinfo
- print/libpaper
- security/libssh2
- security/rhash
- sysutils/gnome_subr
- textproc/expat2
- textproc/libxml2
- www/libnghttp2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/urw-base35-fonts
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/pango
- x11-toolkits/tk86
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/pixman
- x11/xorgproto
Run dependencies 99
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- devel/R-cran-cli
- devel/R-cran-generics
- devel/R-cran-glue
- devel/R-cran-lifecycle
- devel/R-cran-magrittr
- devel/R-cran-pillar
- devel/R-cran-pkgconfig
- devel/R-cran-rlang
- devel/R-cran-tibble
- devel/R-cran-vctrs
- devel/binutils
- devel/cmake-core
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/glib20
- devel/gmake
- devel/icu
- devel/jsoncpp
- devel/libdaemon
- devel/libdatrie
- devel/libevent
- devel/libffi
- devel/libinotify
- devel/libthai
- devel/libunistring
- devel/libuv
- devel/pcre2
- devel/py-packaging
- devel/readline
- dns/libidn
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/graphite2
- graphics/jbig2dec
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/openjpeg
- graphics/png
- graphics/poppler-data
- graphics/tiff
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/R
- math/R-cran-expm
- math/R-cran-mvtnorm
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- net/avahi-app
- ports-mgmt/pkg
- print/cups
- print/freetype2
- print/ghostscript10
- print/harfbuzz
- print/indexinfo
- print/libpaper
- security/libssh2
- security/rhash
- sysutils/gnome_subr
- textproc/R-cran-utf8
- textproc/expat2
- textproc/libxml2
- www/libnghttp2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/urw-base35-fonts
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/pango
- x11-toolkits/tk86
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/pixman
- x11/xorgproto
Required by 2
Configuration
No options to configure.
- USES
- cran:compiles
- Service scripts
- none
Files
pkg-plist 53
- %%R_MOD_DIR%%/CITATION
- %%R_MOD_DIR%%/DESCRIPTION
- %%R_MOD_DIR%%/INDEX
- %%R_MOD_DIR%%/Meta/Rd.rds
- %%R_MOD_DIR%%/Meta/data.rds
- %%R_MOD_DIR%%/Meta/features.rds
- %%R_MOD_DIR%%/Meta/hsearch.rds
- %%R_MOD_DIR%%/Meta/links.rds
- %%R_MOD_DIR%%/Meta/nsInfo.rds
- %%R_MOD_DIR%%/Meta/package.rds
- %%R_MOD_DIR%%/Meta/vignette.rds
- %%R_MOD_DIR%%/NAMESPACE
- %%R_MOD_DIR%%/NEWS
- %%R_MOD_DIR%%/NEWS.md
- %%R_MOD_DIR%%/R/msm
- %%R_MOD_DIR%%/R/msm.rdb
- %%R_MOD_DIR%%/R/msm.rdx
- %%R_MOD_DIR%%/data/Rdata.rdb
- %%R_MOD_DIR%%/data/Rdata.rds
- %%R_MOD_DIR%%/data/Rdata.rdx
- %%R_MOD_DIR%%/doc/index.html
- %%R_MOD_DIR%%/doc/msm-manual.R
- %%R_MOD_DIR%%/doc/msm-manual.Rnw
- %%R_MOD_DIR%%/doc/msm-manual.pdf
- %%R_MOD_DIR%%/help/AnIndex
- %%R_MOD_DIR%%/help/aliases.rds
- %%R_MOD_DIR%%/help/msm.rdb
- %%R_MOD_DIR%%/help/msm.rdx
- %%R_MOD_DIR%%/help/paths.rds
- %%R_MOD_DIR%%/html/00Index.html
- %%R_MOD_DIR%%/html/R.css
- %%R_MOD_DIR%%/libs/msm.so
- %%R_MOD_DIR%%/tests/test_base.R
- %%R_MOD_DIR%%/tests/testthat/helper.r
- %%R_MOD_DIR%%/tests/testthat/test_analyticp.r
- %%R_MOD_DIR%%/tests/testthat/test_boot.R
- %%R_MOD_DIR%%/tests/testthat/test_datasumm.r
- %%R_MOD_DIR%%/tests/testthat/test_deriv.r
- %%R_MOD_DIR%%/tests/testthat/test_draic.r
- %%R_MOD_DIR%%/tests/testthat/test_hmodel2list.R
- %%R_MOD_DIR%%/tests/testthat/test_models.r
- %%R_MOD_DIR%%/tests/testthat/test_models_hmm.r
- %%R_MOD_DIR%%/tests/testthat/test_models_hmmmulti.r
- %%R_MOD_DIR%%/tests/testthat/test_models_misc.r
- %%R_MOD_DIR%%/tests/testthat/test_msm2Surv.R
- %%R_MOD_DIR%%/tests/testthat/test_pearson.R
- %%R_MOD_DIR%%/tests/testthat/test_phase.R
- %%R_MOD_DIR%%/tests/testthat/test_ppass.R
- %%R_MOD_DIR%%/tests/testthat/test_simul.R
- %%R_MOD_DIR%%/tests/testthat/test_tidy.R
- %%R_MOD_DIR%%/tests/testthat/test_utils.r
- %%R_MOD_DIR%%/tests/testthat/test_viterbi.R
- %%R_MOD_DIR%%/tests/testthat/test_weights.R
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| msm_1.8.2.tar.gz | 995563 | 5b97353978b54d7315bc9690dbfdea0062cc2823d001dbcc035c3420df1ebe26 |
Commit history 0
No commits in the history this site was built from.