devel/R-cran-msm 1.8.2 MidnightBSD

Multi-State Markov and Hidden Markov Models in Continuous Time

System: MidnightBSD
Repository: mports
Maintainer: [email protected]
License: gpl2+
Categories: devel

Description

Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal data. Designed for processes observed at arbitrary times in continuous time (panel data) but some other observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time.

See also: https://github.com/chjackson/msm

In the other systems

The newest version among them is 1.8.2, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

MidnightBSD

devel/R-cran-msm

1.8.2 newest

no data

[email protected]

FreeBSD

devel/R-cran-msm

1.8.2 newest

none known

[email protected]

DragonFly

devel/R-cran-msm

1.8.2 newest

none known

[email protected]

HardenedBSD

devel/R-cran-msm

1.8.2 newest

no data

[email protected]

GhostBSD

devel/R-cran-msm

1.8.2 newest

no data

[email protected]

Install

Binary package:

mport install msm

From mports:

cd /usr/mports/devel/R-cran-msm && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	msm>0:devel/R-cran-msm

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["devel/R-cran-msm"]
  me --> d0["devel/R-cran-generics"]
  me --> d1["devel/R-cran-tibble"]
  me --> d2["math/R-cran-expm"]
  me --> d3["math/R-cran-mvtnorm"]
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

As this port's Makefile names them.

Runtime 4

R-cran-expm>0 : math/R-cran-expm
R-cran-tibble>0 : devel/R-cran-tibble
R-cran-mvtnorm>0 : math/R-cran-mvtnorm
R-cran-generics>0 : devel/R-cran-generics

Test 1

R-cran-testthat>0 : devel/R-cran-testthat

Run dependencies 4

No port depends on this one.

Configuration

No options to configure.

USES: cran:compiles
Service scripts: none

Files

pkg-plist 53

%%R_MOD_DIR%%/CITATION
%%R_MOD_DIR%%/DESCRIPTION
%%R_MOD_DIR%%/INDEX
%%R_MOD_DIR%%/Meta/Rd.rds
%%R_MOD_DIR%%/Meta/data.rds
%%R_MOD_DIR%%/Meta/features.rds
%%R_MOD_DIR%%/Meta/hsearch.rds
%%R_MOD_DIR%%/Meta/links.rds
%%R_MOD_DIR%%/Meta/nsInfo.rds
%%R_MOD_DIR%%/Meta/package.rds
%%R_MOD_DIR%%/Meta/vignette.rds
%%R_MOD_DIR%%/NAMESPACE
%%R_MOD_DIR%%/NEWS
%%R_MOD_DIR%%/NEWS.md
%%R_MOD_DIR%%/R/msm
%%R_MOD_DIR%%/R/msm.rdb
%%R_MOD_DIR%%/R/msm.rdx
%%R_MOD_DIR%%/data/Rdata.rdb
%%R_MOD_DIR%%/data/Rdata.rds
%%R_MOD_DIR%%/data/Rdata.rdx
%%R_MOD_DIR%%/doc/index.html
%%R_MOD_DIR%%/doc/msm-manual.R
%%R_MOD_DIR%%/doc/msm-manual.Rnw
%%R_MOD_DIR%%/doc/msm-manual.pdf
%%R_MOD_DIR%%/help/AnIndex
%%R_MOD_DIR%%/help/aliases.rds
%%R_MOD_DIR%%/help/msm.rdb
%%R_MOD_DIR%%/help/msm.rdx
%%R_MOD_DIR%%/help/paths.rds
%%R_MOD_DIR%%/html/00Index.html
%%R_MOD_DIR%%/html/R.css
%%R_MOD_DIR%%/libs/msm.so
%%R_MOD_DIR%%/tests/test_base.R
%%R_MOD_DIR%%/tests/testthat/helper.r
%%R_MOD_DIR%%/tests/testthat/test_analyticp.r
%%R_MOD_DIR%%/tests/testthat/test_boot.R
%%R_MOD_DIR%%/tests/testthat/test_datasumm.r
%%R_MOD_DIR%%/tests/testthat/test_deriv.r
%%R_MOD_DIR%%/tests/testthat/test_draic.r
%%R_MOD_DIR%%/tests/testthat/test_hmodel2list.R
%%R_MOD_DIR%%/tests/testthat/test_models.r
%%R_MOD_DIR%%/tests/testthat/test_models_hmm.r
%%R_MOD_DIR%%/tests/testthat/test_models_hmmmulti.r
%%R_MOD_DIR%%/tests/testthat/test_models_misc.r
%%R_MOD_DIR%%/tests/testthat/test_msm2Surv.R
%%R_MOD_DIR%%/tests/testthat/test_pearson.R
%%R_MOD_DIR%%/tests/testthat/test_phase.R
%%R_MOD_DIR%%/tests/testthat/test_ppass.R
%%R_MOD_DIR%%/tests/testthat/test_simul.R
%%R_MOD_DIR%%/tests/testthat/test_tidy.R
%%R_MOD_DIR%%/tests/testthat/test_utils.r
%%R_MOD_DIR%%/tests/testthat/test_viterbi.R
%%R_MOD_DIR%%/tests/testthat/test_weights.R

distinfo 1

File

Size

SHA256

msm_1.8.2.tar.gz

995563

5b97353978b54d7315bc9690dbfdea0062cc2823d001dbcc035c3420df1ebe26