BSD Portsbiology/canu 2.2_6 DragonFly
Single molecule sequence assembler
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv2
- Categories
- biology, java, perl5
- Package size
- 2055.6 KiB, 11265.5 KiB installed
Description
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
Detect overlaps in high-noise sequences using MHAP
Generate corrected sequence consensus
Trim corrected sequences
Assemble trimmed corrected sequences
In the other systems
The newest version among them is 2.3, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/canu | 2.2_6 behind since 2026-08-23 | none known | - | [email protected] | - |
| FreeBSD | biology/canu | 2.3 newest | none known | - | [email protected] | 2026-10-08 |
| NetBSD | biology/canu | 2.2nb11 behind since 2026-08-23 | none known | - | [email protected] | 2026-08-24 |
| HardenedBSD | biology/canu | 2.3 newest | no data | - | [email protected] | - |
| GhostBSD | biology/canu | 2.3 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install canuFrom DPorts:
cd /usr/dports/biology/canu && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 4
No port depends on this one.