BSD Portsbiology/canu 2.2nb11 NetBSD
Single molecule sequence assembler for genomes large and small
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- Last update
- Commit
d83d7cec2c- License
- gnu-gpl-v2
- Categories
- biology, java
- Package size
- 2079.3 KiB, 11131.1 KiB installed
Description
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
Detect overlaps in high-noise sequences using MHAP
Generate corrected sequence consensus
Trim corrected sequences
Assemble trimmed corrected sequences
In the other systems
The newest version among them is 2.3, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/canu | 2.2nb11 behind since 2026-08-23 | none known | - | [email protected] | 2026-08-24 |
| FreeBSD | biology/canu | 2.3 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/canu | 2.2_6 behind since 2026-08-23 | none known | - | [email protected] | - |
| HardenedBSD | biology/canu | 2.3 newest | no data | - | [email protected] | - |
| GhostBSD | biology/canu | 2.3 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install canuFrom pkgsrc:
cd /usr/pkgsrc/biology/canu && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 2.2nb11 |
| NetBSD 10.1 aarch64 | 2.2nb11 |
| SmartOS / illumos x86_64 | - |
| macOS 15 arm64 | 2.2nb11 |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 2
No port depends on this one.