BSD Portswip/canu 2.2 NetBSD
Single molecule sequence assembler for genomes large and small
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v2
- Categories
- wip, biology, java
Description
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
Detect overlaps in high-noise sequences using MHAP
Generate corrected sequence consensus
Trim corrected sequences
Assemble trimmed corrected sequences
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/canu | 2.2 |
| FreeBSD | biology/canu | 2.3 |
| DragonFly | biology/canu | 2.2_6 |
| HardenedBSD | biology/canu | 2.3 |
| GhostBSD | biology/canu | 2.3 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/canu && make install cleanDependencies
Run dependencies 2
No port depends on this one.