BSD Portsbiology/infernal 1.1.5 DragonFly
Search sequence databases for structural RNA homologs
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- BSD3CLAUSE
- Categories
- biology
- Package size
- 3748.2 KiB, 26421.2 KiB installed
Description
Infernal, standing for "INFERence of RNA ALignment", is a tool for searching DNA sequence database for RNA structure and sequence similarities.
It is based on Covariance Model (CM), which scores a combination of sequence consensus and RNA secondary structure consensus, and thus is more capable of identifying RNA homologs than using primary sequence profile.
The Rfam database of RNA families is based on Infernal.
Citation: Nawrocki & Eddy (2013) Infernal 1.1: 100-fold faster RNA homology searches, Bioinformatics 29: 2933-2935.
In the other systems
The newest version among them is 1.1.5, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/infernal | 1.1.5 newest | none known | - | [email protected] | - |
| FreeBSD | biology/infernal | 1.1.5 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/infernal | 1.1.5 newest | no data | - | [email protected] | - |
| GhostBSD | biology/infernal | 1.1.5 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install infernalFrom DPorts:
cd /usr/dports/biology/infernal && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.